Aliases for LOC100505622 Gene

Subcategory (RNA class) for LOC100505622 Gene

lncRNA

Quality Score for this RNA gene is

11

Aliases for LOC100505622 Gene

  • Uncharacterized LOC100505622 3
  • CTC-378H22.1 3

External Ids for LOC100505622 Gene

Previous GeneCards Identifiers for LOC100505622 Gene

  • GC19P042637

Summaries for LOC100505622 Gene

GeneCards Summary for LOC100505622 Gene

LOC100505622 (Uncharacterized LOC100505622) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100505622 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100505622 Gene

Genomics for LOC100505622 Gene

GeneHancer (GH) Regulatory Elements for LOC100505622 Gene

Promoters and enhancers for LOC100505622 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J042127 Promoter/Enhancer 2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 750.6 -2.0 -1967 6.5 ZNF24 SP1 CTCF POLR2A CC2D1A ETV6 RELA RAD21 ZNF121 SREBF1 POU2F2 ENSG00000254887 LOC100505622 lnc-GRIK5-3 GRIK5 MEGF8 DEDD2 ARHGEF1 MIR4323 piR-60137
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505622 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100505622 Gene

Genomic Locations for LOC100505622 Gene
chr19:42,132,629-42,137,099
(GRCh38/hg38)
Size:
4,471 bases
Orientation:
Plus strand
chr19:42,636,707-42,641,251
(GRCh37/hg19)
Size:
4,545 bases
Orientation:
Plus strand

Genomic View for LOC100505622 Gene

Genes around LOC100505622 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505622 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505622 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505622 Gene

Proteins for LOC100505622 Gene

Post-translational modifications for LOC100505622 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505622 Gene

Domains & Families for LOC100505622 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100505622 Gene

Function for LOC100505622 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505622 Gene

Localization for LOC100505622 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505622 Gene

Pathways & Interactions for LOC100505622 Gene

PathCards logo

SuperPathways for LOC100505622 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100505622 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505622 Gene

Drugs & Compounds for LOC100505622 Gene

No Compound Related Data Available

Transcripts for LOC100505622 Gene

mRNA/cDNA for LOC100505622 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505622 Gene

No ASD Table

Relevant External Links for LOC100505622 Gene

GeneLoc Exon Structure for
LOC100505622

Expression for LOC100505622 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100505622 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100505622 Gene

This gene is overexpressed in Whole Blood (x13.2), Spleen (x7.8), and Small Intestine - Terminal Ileum (x4.2).

SOURCE GeneReport for Unigene cluster for LOC100505622 Gene:

Hs.661761
genes like me logo Genes that share expression patterns with LOC100505622: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505622 Gene

Orthologs for LOC100505622 Gene

No data available for Orthologs and Evolution for LOC100505622 Gene

Paralogs for LOC100505622 Gene

No data available for Paralogs for LOC100505622 Gene

Variants for LOC100505622 Gene

Sequence variations from dbSNP and Humsavar for LOC100505622 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000185771 -- 42,131,212(+) G/T upstream_transcript_variant
rs1000289252 -- 42,135,777(+) G/A intron_variant
rs1000395313 -- 42,137,512(+) A/G downstream_transcript_variant
rs1001333101 -- 42,136,755(+) C/T non_coding_transcript_variant
rs1001386938 -- 42,136,293(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100505622 Gene

Variant ID Type Subtype PubMed ID
nsv1138707 CNV deletion 24896259
nsv2496 CNV insertion 18451855
nsv520239 CNV loss 19592680
nsv522854 CNV gain 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100505622 Gene

Disorders for LOC100505622 Gene

No disorders were found for LOC100505622 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505622 Gene

Publications for LOC100505622 Gene

No publications were found for LOC100505622 Gene.

No data available for External Links for LOC100505622 Gene

Products for LOC100505622 Gene

Sources for LOC100505622 Gene