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Aliases for LOC100505585 Gene

Subcategory (RNA class) for LOC100505585 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100505585 Gene

  • Uncharacterized LOC100505585 3

External Ids for LOC100505585 Gene

Previous GeneCards Identifiers for LOC100505585 Gene

  • GC19P042427

Summaries for LOC100505585 Gene

GeneCards Summary for LOC100505585 Gene

LOC100505585 (Uncharacterized LOC100505585) is an RNA Gene, and is affiliated with the ncRNA class. Among its related pathways are Signaling by Rho GTPases and p75 NTR receptor-mediated signalling.

Additional gene information for LOC100505585 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100505585 Gene

Genomics for LOC100505585 Gene

GeneHancer (GH) Regulatory Elements for LOC100505585 Gene

Promoters and enhancers for LOC100505585 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041928 Promoter/Enhancer 1.5 Ensembl ENCODE 600.7 -0.1 -71 1.9 CC2D1A ZNF148 MLLT1 ZNF121 GTF2F1 CDC5L MCM2 ZBTB7A SP7 TRIM24 LOC390937 LOC100505585 ZNF526 ZNF574 HNRNPUL1 CCDC97 RABAC1 ARHGEF1
GH19J041930 Enhancer 0.7 ENCODE 600.7 +1.6 1584 0.2 SMARCA4 IKZF1 ZNF300 ZNF600 ATF1 HDAC1 NKRF EZH2 MGA MTA3 LOC100505585 LOC390937 GC19P041933
GH19J041932 Enhancer 0.7 ENCODE 600.7 +1.9 1864 0.2 SMARCA4 IKZF1 ZNF600 ATF1 HDAC1 NKRF MGA MTA3 POLR2A ZBTB2 LOC100505585 GC19P041933
GH19J041929 Enhancer 0.7 ENCODE 600.7 +1.2 1204 0.2 ZSCAN21 ATF1 EZH2 MGA HDAC2 ZSCAN18 PTBP1 BCOR CBX1 PHF20 LOC390937 LOC100505585 GC19P041933 ARHGEF1
GH19J041931 Enhancer 0.7 ENCODE 0.7 +2.6 2624 0.2 ZSCAN21 KLF14 MZF1 ZIC2 CTCF ZNF561 ZNF792 ZBTB20 DPF2 ZNF10 GC19P041933 LOC100505585
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505585 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100505585 Gene

Genomic Locations for LOC100505585 Gene
chr19:41,928,820-41,930,136
(GRCh38/hg38)
Size:
1,317 bases
Orientation:
Plus strand
chr19:42,427,246-42,434,299
(GRCh37/hg19)
Size:
7,054 bases
Orientation:
Plus strand

Genomic View for LOC100505585 Gene

Genes around LOC100505585 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505585 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505585 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505585 Gene

Proteins for LOC100505585 Gene

Post-translational modifications for LOC100505585 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505585 Gene

Domains & Families for LOC100505585 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100505585 Gene

Function for LOC100505585 Gene

Phenotypes for LOC100505585 Gene

genes like me logo Genes that share phenotypes with LOC100505585: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505585 Gene

Localization for LOC100505585 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505585 Gene

Pathways & Interactions for LOC100505585 Gene

genes like me logo Genes that share pathways with LOC100505585: view

Interacting Proteins for LOC100505585 Gene

Gene Ontology (GO) - Biological Process for LOC100505585 Gene

None

No data available for SIGNOR curated interactions for LOC100505585 Gene

Drugs & Compounds for LOC100505585 Gene

No Compound Related Data Available

Transcripts for LOC100505585 Gene

mRNA/cDNA for LOC100505585 Gene

(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505585 Gene

No ASD Table

Relevant External Links for LOC100505585 Gene

GeneLoc Exon Structure for
LOC100505585

Expression for LOC100505585 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505585 Gene

Orthologs for LOC100505585 Gene

No data available for Orthologs and Evolution for LOC100505585 Gene

Paralogs for LOC100505585 Gene

No data available for Paralogs for LOC100505585 Gene

Variants for LOC100505585 Gene

Sequence variations from dbSNP and Humsavar for LOC100505585 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1001188354 -- 41,927,692(+) C/T upstream_transcript_variant
rs1001220874 -- 41,927,983(+) T/C/G upstream_transcript_variant
rs1003528189 -- 41,928,809(+) C/T upstream_transcript_variant
rs1003579069 -- 41,929,135(+) A/G intron_variant
rs1004651714 -- 41,927,574(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100505585 Gene

Disorders for LOC100505585 Gene

No disorders were found for LOC100505585 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505585 Gene

Publications for LOC100505585 Gene

No publications were found for LOC100505585 Gene.

No data available for External Links for LOC100505585 Gene

Products for LOC100505585 Gene

Sources for LOC100505585 Gene

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