Aliases for LOC100505585 Gene

Data sources for LOC100505585 Gene:

RNA type for LOC100505585 Gene

lncRNA

Aliases for LOC100505585 Gene

External Ids for LOC100505585 Gene

Previous GeneCards Identifiers for LOC100505585 Gene

  • GC19P042427

Summaries for LOC100505585 Gene

GeneCards Summary for LOC100505585 Gene

LOC100505585 (Uncharacterized LOC100505585) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are p75 NTR receptor-mediated signalling and Signaling by GPCR.

Additional gene information for LOC100505585 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100505585 Gene

Genomics for LOC100505585 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100505585 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J041928 Promoter/Enhancer 1.3 Ensembl ENCODE 250.7 -0.1 -71 1.9 MYC IKZF1 NCOR1 ZNF600 ZNF10 ZBTB10 NONO SMAD5 TBP ZEB1 ERFL HSALNG0126248 LOC100505585 lnc-ARHGEF1-3 ZNF526 HNRNPUL1 ZNF574 CCDC97 RABAC1 ARHGEF1
GH19J041930 Enhancer 0.7 ENCODE 250.7 +1.6 1584 0.2 MYC IKZF1 ZNF600 SMAD5 BHLHE40 TBP MNT NKRF ELF1 CBX1 ERFL HSALNG0126248 LOC100505585 lnc-ARHGEF1-3 RABAC1
GH19J041932 Enhancer 0.7 ENCODE 250.7 +1.9 1864 0.2 MYC IKZF1 ZNF600 SMAD5 TBP NKRF SUPT5H SMARCA4 EHMT2 EP400 ERFL HSALNG0126248 LOC100505585 lnc-ARHGEF1-3 lnc-ARHGEF1-4 RABAC1
GH19J041929 Enhancer 0.6 ENCODE 250.7 +1.2 1204 0.2 PTBP1 CBX1 HDAC2 EP400 ZBTB33 ARHGAP35 ZNF143 ZMYM3 PHF20 ATF1 ERFL HSALNG0126248 LOC100505585 lnc-ARHGEF1-3 RABAC1 ARHGEF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505585 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100505585 Gene

Latest Assembly
chr19:41,928,820-41,930,136
(GRCh38/hg38)
Size:
1,317 bases
Orientation:
Plus strand

Previous Assembly
chr19:42,432,972-42,434,288
(GRCh37/hg19 by Entrez Gene)
Size:
1,317 bases
Orientation:
Plus strand

Genomic View for LOC100505585 Gene

Genes around LOC100505585 on UCSC Golden Path with GeneCards custom track
LOC100505585 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100505585 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505585 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505585 Gene

Proteins for LOC100505585 Gene

Post-translational modifications for LOC100505585 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505585 Gene

Domains & Families for LOC100505585 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100505585 Gene

Function for LOC100505585 Gene

Phenotypes for LOC100505585 Gene

genes like me logo Genes that share phenotypes with LOC100505585: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505585 Gene

Localization for LOC100505585 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505585 Gene

Pathways & Interactions for LOC100505585 Gene

genes like me logo Genes that share pathways with LOC100505585: view

Gene Ontology (GO) - Biological Process for LOC100505585 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for LOC100505585 Gene

Drugs & Compounds for LOC100505585 Gene

No Compound Related Data Available

Transcripts for LOC100505585 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100505585 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A76F8D_9606 lncRNA 649 1

RefSeq: NR_135626,

LOC100505585 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505585 Gene

No ASD Table

Relevant External Links for LOC100505585 Gene

GeneLoc Exon Structure for
LOC100505585

No data available for mRNA/cDNA for LOC100505585 Gene

Expression for LOC100505585 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505585 Gene

Orthologs for LOC100505585 Gene

No data available for Orthologs and Evolution for LOC100505585 Gene

Paralogs for LOC100505585 Gene

No data available for Paralogs for LOC100505585 Gene

Variants for LOC100505585 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100505585 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100505585 Gene

Disorders for LOC100505585 Gene

No disorders were found for LOC100505585 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505585 Gene

Publications for LOC100505585 Gene

No publications were found for LOC100505585 Gene.

No data available for Mastermind for LOC100505585 Gene

Products for LOC100505585 Gene

Sources for LOC100505585 Gene