Aliases for LOC100505555 Gene

Subcategory (RNA class) for LOC100505555 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100505555 Gene

  • Uncharacterized LOC100505555 3
  • NONHSAG024752.2 91
  • HSALNG0123868 164
  • Lnc-ZNF846-2 165

External Ids for LOC100505555 Gene

Previous GeneCards Identifiers for LOC100505555 Gene

  • GC19M009898

Summaries for LOC100505555 Gene

GeneCards Summary for LOC100505555 Gene

LOC100505555 (Uncharacterized LOC100505555) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100505555 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100505555 Gene

Genomics for LOC100505555 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100505555 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J009788 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 +2.1 2132 5.9 BRCA1 SP1 CTCF ATF7 ZNF629 RFX1 LEF1 IKZF1 JUND DDX20 ZNF846 ENSG00000266950 ZNF561 ZNF266 FBXL12 KRI1 DNMT1 ZNF699 ICAM1 LOC100505555
GH19J009783 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +8.1 8079 5.4 BRCA1 GATAD2A PRDM10 ZNF629 TFE3 LEF1 IKZF1 NFKBIZ POLR2A JUND lnc-FBXL12-2 lnc-FBXL12-3 ZNF561 ILF3 DNMT1 ZNF559 ZNF846 ZNF266 COL5A3 LOC100505555
GH19J009795 Enhancer 1 Ensembl ENCODE 0.7 -4.5 -4521 4.6 CTCF RFX1 JUND PRDM1 PKNOX1 REST NR2C1 RAD21 TRIM22 HDAC1 ZNF561 UBL5 ZNF559 ZNF266 ENSG00000266950 LOC100505555 ZNF846 piR-55985-092 FBXL12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505555 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100505555 Gene

Genomic Locations for LOC100505555 Gene
chr19:9,787,405-9,793,180
(GRCh38/hg38)
Size:
5,776 bases
Orientation:
Minus strand
chr19:9,898,082-9,903,779
(GRCh37/hg19)
Size:
5,698 bases
Orientation:
Minus strand

Genomic View for LOC100505555 Gene

Genes around LOC100505555 on UCSC Golden Path with GeneCards custom track
LOC100505555 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100505555 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505555 Gene

Proteins for LOC100505555 Gene

Post-translational modifications for LOC100505555 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505555 Gene

Domains & Families for LOC100505555 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100505555 Gene

Function for LOC100505555 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505555 Gene

Localization for LOC100505555 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505555 Gene

Pathways & Interactions for LOC100505555 Gene

PathCards logo

SuperPathways for LOC100505555 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100505555 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100505555 Gene

Drugs & Compounds for LOC100505555 Gene

No Compound Related Data Available

Transcripts for LOC100505555 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100505555 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC440E_9606 lncRNA 652 1

RefSeq: NR_148545,

URS00009BAE93_9606 lncRNA 707 3

LncBook: HSALNT0255578,

LNCipedia: lnc-ZNF846-2:3,

NONCODE: NONHSAT060997.2,

URS00008BAE9F_9606 lncRNA 294 3

LncBook: HSALNT0255579,

LNCipedia: lnc-ZNF846-2:4,

NONCODE: NONHSAT060999.2,

URS0000D5723C_9606 lncRNA 650 1

LNCipedia: lnc-ZNF846-2:2,

LOC100505555 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100505555 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505555 Gene

No ASD Table

Relevant External Links for LOC100505555 Gene

GeneLoc Exon Structure for
LOC100505555

Expression for LOC100505555 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100505555

SOURCE GeneReport for Unigene cluster for LOC100505555 Gene:

Hs.445295
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505555 Gene

Orthologs for LOC100505555 Gene

No data available for Orthologs and Evolution for LOC100505555 Gene

Paralogs for LOC100505555 Gene

No data available for Paralogs for LOC100505555 Gene

Variants for LOC100505555 Gene

Additional dbSNP identifiers (rs#s) for LOC100505555 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100505555 Gene

Disorders for LOC100505555 Gene

No disorders were found for LOC100505555 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505555 Gene

Publications for LOC100505555 Gene

No publications were found for LOC100505555 Gene.

No data available for Mastermind for LOC100505555 Gene

Products for LOC100505555 Gene

Sources for LOC100505555 Gene