Aliases for LOC100505524 Gene

Aliases for LOC100505524 Gene

  • Chromosome 5 Open Reading Frame 63 Pseudogene 3

External Ids for LOC100505524 Gene

Previous GeneCards Identifiers for LOC100505524 Gene

  • GC11P066221

Summaries for LOC100505524 Gene

GeneCards Summary for LOC100505524 Gene

LOC100505524 (Chromosome 5 Open Reading Frame 63 Pseudogene) is a Pseudogene.

Additional gene information for LOC100505524 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100505524 Gene

Genomics for LOC100505524 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100505524 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J066454 Enhancer 0.4 FANTOM5 Ensembl 250.7 +0.6 612 1.4 ENSG00000254596 LOC100505524 lnc-PELI3-1 DPP3 DPP3-DT RIN1 RBM4 NPAS4 ENSG00000254510 RNU1-84P
GH11J066443 Enhancer 0.8 Ensembl ENCODE 0.4 -10.1 -10088 2.8 CEBPB MAX EP300 PRDM1 RFX5 STAT3 TBP SPI1 MYC POLR2A DPP3-DT piR-58297-078 LOC100505524 MRPL11 PELI3 NPAS4
GH11J066448 Enhancer 0.5 Ensembl 0.7 -4.5 -4488 3.6 CEBPA TEAD3 SPI1 SCRT1 SCRT2 ACTN3 DPP3 DPP3-DT CTSF NPAS4 ENSG00000254510 RNU1-84P BRD9P1 CD248 MUS81
GH11J066446 Enhancer 0.3 Ensembl 0.4 -7.0 -6988 0.6 HDAC8 DPP3 DPP3-DT LOC100505524 piR-58297-078 PELI3 MRPL11 NPAS4
GH11J066447 Enhancer 0.2 Ensembl 0.4 -7.6 -7588 0.2 LOC100505524 piR-58297-078 PELI3 MRPL11 NPAS4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505524 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100505524 Gene

Latest Assembly
chr11:66,454,089-66,454,740
(GRCh38/hg38)
Size:
652 bases
Orientation:
Plus strand

Previous Assembly
chr11:66,221,560-66,222,211
(GRCh37/hg19 by Entrez Gene)
Size:
652 bases
Orientation:
Plus strand

Genomic View for LOC100505524 Gene

Genes around LOC100505524 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505524 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505524 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505524 Gene

Proteins for LOC100505524 Gene

Post-translational modifications for LOC100505524 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100505524 Gene

Domains & Families for LOC100505524 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100505524 Gene

Function for LOC100505524 Gene

Phenotypes From GWAS Catalog for LOC100505524 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505524 Gene

Localization for LOC100505524 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100505524 Gene

Pathways & Interactions for LOC100505524 Gene

PathCards logo

SuperPathways for LOC100505524 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100505524 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100505524 Gene

Drugs & Compounds for LOC100505524 Gene

No Compound Related Data Available

Transcripts for LOC100505524 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505524 Gene

No ASD Table

Relevant External Links for LOC100505524 Gene

GeneLoc Exon Structure for
LOC100505524

No data available for mRNA/cDNA for LOC100505524 Gene

Expression for LOC100505524 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100505524 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100505524 Gene

This gene is overexpressed in Testis (x5.5).
genes like me logo Genes that share expression patterns with LOC100505524: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505524 Gene

Orthologs for LOC100505524 Gene

No data available for Orthologs and Evolution for LOC100505524 Gene

Paralogs for LOC100505524 Gene

No data available for Paralogs for LOC100505524 Gene

Variants for LOC100505524 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100505524 Gene

Disorders for LOC100505524 Gene

No disorders were found for LOC100505524 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505524 Gene

Publications for LOC100505524 Gene

No publications were found for LOC100505524 Gene.

No data available for Mastermind for LOC100505524 Gene

Products for LOC100505524 Gene

Sources for LOC100505524 Gene