Aliases for LOC100505502 Gene

Aliases for LOC100505502 Gene

  • Putative UPF0607 Protein FLJ37424 3

External Ids for LOC100505502 Gene

Previous GeneCards Identifiers for LOC100505502 Gene

  • GC10M031651

Summaries for LOC100505502 Gene

GeneCards Summary for LOC100505502 Gene

LOC100505502 (Putative UPF0607 Protein FLJ37424) is a Protein Coding gene.

Additional gene information for LOC100505502 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100505502 Gene

Genomics for LOC100505502 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100505502 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J031398 Enhancer 0.3 Ensembl ENCODE 250.7 +0.3 252 1.8 LOC100505502 lnc-ZNF438-4 ZEB1-AS1 ENSG00000285781 ZEB1
GH10J031401 Enhancer 0.8 Ensembl ENCODE 0.7 -2.1 -2145 1.4 ZNF600 FEZF1 KLF7 KLF9 PRDM6 FOXA1 FOXP1 KLF1 MNT OSR2 LOC100505502 piR-41525-060 ZEB1 ARHGAP12
GH10J031316 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +79.3 79259 7 BCLAF1 SP1 ZNF207 POLR2A CEBPA ZNF10 ZIC2 ZBTB10 YY1 ZNF217 ZEB1-AS1 HSALNG0077083 ZEB1 lnc-MAP3K8-21 lnc-MAP3K8-25 MTPAP ENSG00000226842 SPTLC1P1 SVIL2P lnc-ZNF438-1
GH10J031384 Enhancer 0.9 Ensembl ENCODE 0.4 +15.5 15454 2.2 SP1 ZNF207 BCL11A IRF4 EBF1 CBFB BHLHE40 BATF ELF1 IKZF1 LOC100505502 lnc-ZNF438-4 ENSG00000285781 ZEB1 lnc-MAP3K8-25
GH10J031404 Enhancer 0.7 Ensembl 0.4 -5.0 -5046 0.4 CEBPA SMAD4 SAP130 RARA TAL1 ATF1 ETV1 HNF4A TBX3 ZNF384 LOC100505502 piR-41525-060 ZEB1 ARHGAP12
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100505502 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100505502 Gene

Latest Assembly
chr10:31,361,427-31,399,755
(GRCh38/hg38)
Size:
38,329 bases
Orientation:
Minus strand

Previous Assembly
chr10:31,650,356-31,688,684
(GRCh37/hg19 by Entrez Gene)
Size:
38,329 bases
Orientation:
Minus strand

Genomic View for LOC100505502 Gene

Genes around LOC100505502 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100505502 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100505502 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100505502 Gene

Proteins for LOC100505502 Gene

Post-translational modifications for LOC100505502 Gene

No Post-translational modifications

Other Protein References for LOC100505502 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100505502 Gene

Domains & Families for LOC100505502 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100505502 Gene

Function for LOC100505502 Gene

Phenotypes From GWAS Catalog for LOC100505502 Gene

Gene Ontology (GO) - Molecular Function for LOC100505502 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IBA 21873635
GO:0048306 calcium-dependent protein binding IBA 21873635
genes like me logo Genes that share ontologies with LOC100505502: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100505502 Gene

Localization for LOC100505502 Gene

Gene Ontology (GO) - Cellular Components for LOC100505502 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IBA 21873635
GO:0005737 cytoplasm IBA 21873635
genes like me logo Genes that share ontologies with LOC100505502: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for LOC100505502 Gene

Pathways & Interactions for LOC100505502 Gene

PathCards logo

SuperPathways for LOC100505502 Gene

No Data Available

Interacting Proteins for LOC100505502 Gene

Gene Ontology (GO) - Biological Process for LOC100505502 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100505502 Gene

Drugs & Compounds for LOC100505502 Gene

No Compound Related Data Available

Transcripts for LOC100505502 Gene

mRNA/cDNA for LOC100505502 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100505502 Gene

No ASD Table

Relevant External Links for LOC100505502 Gene

GeneLoc Exon Structure for
LOC100505502

Expression for LOC100505502 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100505502 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100505502 Gene

This gene is overexpressed in Testis (x26.4) and Muscle - Skeletal (x4.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC100505502 Gene



Protein tissue co-expression partners for LOC100505502 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100505502

SOURCE GeneReport for Unigene cluster for LOC100505502 Gene:

Hs.730227
genes like me logo Genes that share expression patterns with LOC100505502: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100505502 Gene

Orthologs for LOC100505502 Gene

No data available for Orthologs and Evolution for LOC100505502 Gene

Paralogs for LOC100505502 Gene

No data available for Paralogs for LOC100505502 Gene

Variants for LOC100505502 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100505502 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100505502 Gene

Disorders for LOC100505502 Gene

No disorders were found for LOC100505502 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100505502 Gene

Publications for LOC100505502 Gene

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100505502 Gene

Products for LOC100505502 Gene

Sources for LOC100505502 Gene