Aliases for LOC100499223 Gene

Aliases for LOC100499223 Gene

  • Beta-1,3-N-Acetylgalactosaminyltransferase 1 (Globoside Blood Group) Pseudogene 3

External Ids for LOC100499223 Gene

Previous GeneCards Identifiers for LOC100499223 Gene

  • GC01U903067
  • GC01P179191

Summaries for LOC100499223 Gene

GeneCards Summary for LOC100499223 Gene

LOC100499223 (Beta-1,3-N-Acetylgalactosaminyltransferase 1 (Globoside Blood Group) Pseudogene) is a Pseudogene.

Additional gene information for LOC100499223 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100499223 Gene

Genomics for LOC100499223 Gene

GeneHancer (GH) Regulatory Elements for LOC100499223 Gene

Promoters and enhancers for LOC100499223 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J179217 Enhancer 1 FANTOM5 ENCODE 0.6 -2.1 -2120 1.6 ZNF24 SMARCE1 CC2D1A ELF1 TEAD4 MAFK BACH1 SMARCA4 TRIM24 GMEB1 ANGPTL1 TOR3A TOR1AIP1 ABL2 SOAT1 AXDND1 LOC100499223 lnc-SOAT1-4
GH01J179215 Enhancer 0.6 Ensembl 0.6 -4.6 -4579 1 ZNF384 PRDM1 IKZF1 IKZF2 DPF2 NR2F1 JUNB SMARCA5 BATF PRDM6 TOR3A AXDND1 LOC100499223 ABL2 lnc-SOAT1-4
GH01J179208 Enhancer 0.7 Ensembl 0.4 -11.2 -11179 2.2 SMARCE1 TEAD4 CBFA2T2 SMARCA4 GMEB1 DPF2 PKNOX1 PRDM10 ZEB2 ZNF629 TOR3A AXDND1 lnc-SOAT1-4 LOC100499223 ABL2
GH01J179200 Enhancer 0.3 Ensembl 0.4 -18.5 -18479 3.6 MAFK SCRT2 EIF4A1P11 ENSG00000201619 lnc-SOAT1-4 TOR3A ABL2 AXDND1 FAM20B LOC100499223
GH01J179211 Enhancer 0.2 Ensembl 0.4 -9.3 -9279 0.4 TOR3A LOC100499223 lnc-SOAT1-4 ABL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100499223 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100499223 Gene

Genomic Locations for LOC100499223 Gene
chr1:179,220,480-179,222,232
(GRCh38/hg38)
Size:
1,753 bases
Orientation:
Plus strand
chr1:179,189,615-179,191,367
(GRCh37/hg19)
Size:
1,753 bases
Orientation:
Plus strand

Genomic View for LOC100499223 Gene

Genes around LOC100499223 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100499223 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100499223 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100499223 Gene

Proteins for LOC100499223 Gene

Post-translational modifications for LOC100499223 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100499223 Gene

Domains & Families for LOC100499223 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100499223 Gene

Function for LOC100499223 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100499223 Gene

Localization for LOC100499223 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100499223 Gene

Pathways & Interactions for LOC100499223 Gene

PathCards logo

SuperPathways for LOC100499223 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100499223 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100499223 Gene

Drugs & Compounds for LOC100499223 Gene

No Compound Related Data Available

Transcripts for LOC100499223 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100499223 Gene

No ASD Table

Relevant External Links for LOC100499223 Gene

GeneLoc Exon Structure for
LOC100499223

No data available for mRNA/cDNA for LOC100499223 Gene

Expression for LOC100499223 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100499223 Gene

genes like me logo Genes that share expression patterns with LOC100499223: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100499223 Gene

Orthologs for LOC100499223 Gene

No data available for Orthologs and Evolution for LOC100499223 Gene

Paralogs for LOC100499223 Gene

No data available for Paralogs for LOC100499223 Gene

Variants for LOC100499223 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100499223 Gene

Disorders for LOC100499223 Gene

No disorders were found for LOC100499223 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100499223 Gene

Publications for LOC100499223 Gene

No publications were found for LOC100499223 Gene.

No data available for External Links for LOC100499223 Gene

Products for LOC100499223 Gene

Sources for LOC100499223 Gene