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Aliases for LOC100422710 Gene

Subcategory (RNA class) for LOC100422710 Gene

antisense

Aliases for LOC100422710 Gene

  • Protein Tyrosine Phosphatase, Receptor Type, F Polypeptide (PTPRF), Interacting Protein (Liprin), Alpha 1 Pseudogene 3
  • PTPRF Interacting Protein Alpha 1 Pseudogene 3

External Ids for LOC100422710 Gene

ORGUL Members for LOC100422710 Gene

Previous GeneCards Identifiers for LOC100422710 Gene

  • GC02U902103
  • GC02P234454

Summaries for LOC100422710 Gene

GeneCards Summary for LOC100422710 Gene

LOC100422710 (Protein Tyrosine Phosphatase, Receptor Type, F Polypeptide (PTPRF), Interacting Protein (Liprin), Alpha 1 Pseudogene) is a Pseudogene, and is affiliated with the antisense RNA class.

Additional gene information for LOC100422710 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100422710 Gene

Genomics for LOC100422710 Gene

GeneHancer (GH) Regulatory Elements for LOC100422710 Gene

Promoters and enhancers for LOC100422710 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J233543 Enhancer 0.5 Ensembl 600.7 -1.2 -1182 1.4 RXRA SP1 HNF4A HNF4G LOC100422710 ENSG00000271639 USP40 PIR59405
GH02J233546 Enhancer 0.2 Ensembl 600.7 +0.6 619 0.2 ENSG00000271639 LOC100422710 USP40
GH02J233565 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.3 +21.0 20971 2.3 ZNF652 ELF3 ZFX ZNF148 NKRF POLR2A ZNF121 RERE GTF2F1 ZNF687 USP40 SCARNA6 GIGYF2 ATG16L1 LOC100422710 ENSG00000271639
GH02J233556 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 +11.9 11904 1.7 BACH1 MAFK NFE2L2 ZNF316 CEBPB JUN SP1 NFE2 MAX EP300 USP40 HJURP LOC100422710 ENSG00000271639
GH02J233542 Enhancer 0.5 ENCODE 0.7 -2.8 -2812 0.2 CEBPA CEBPB EP300 CEBPG ZBTB33 NR2F6 USP40 ENSG00000271639 LOC100422710 PIR59405
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100422710 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100422710 Gene

Genomic Locations for LOC100422710 Gene
chr2:233,545,482-233,546,942
(GRCh38/hg38)
Size:
1,461 bases
Orientation:
Plus strand
chr2:234,454,128-234,455,678
(GRCh37/hg19)
Size:
1,551 bases
Orientation:
Plus strand

Genomic View for LOC100422710 Gene

Genes around LOC100422710 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100422710 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100422710 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100422710 Gene

Proteins for LOC100422710 Gene

Post-translational modifications for LOC100422710 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100422710 Gene

Domains & Families for LOC100422710 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100422710 Gene

Function for LOC100422710 Gene

Phenotypes From GWAS Catalog for LOC100422710 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100422710 Gene

Localization for LOC100422710 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100422710 Gene

Pathways & Interactions for LOC100422710 Gene

PathCards logo

SuperPathways for LOC100422710 Gene

No Data Available

Interacting Proteins for LOC100422710 Gene

Gene Ontology (GO) - Biological Process for LOC100422710 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100422710 Gene

Drugs & Compounds for LOC100422710 Gene

No Compound Related Data Available

Transcripts for LOC100422710 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100422710 Gene

No ASD Table

Relevant External Links for LOC100422710 Gene

GeneLoc Exon Structure for
LOC100422710

No data available for mRNA/cDNA for LOC100422710 Gene

Expression for LOC100422710 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100422710 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100422710 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x4.1).
genes like me logo Genes that share expression patterns with LOC100422710: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100422710 Gene

Orthologs for LOC100422710 Gene

No data available for Orthologs and Evolution for LOC100422710 Gene

Paralogs for LOC100422710 Gene

No data available for Paralogs for LOC100422710 Gene

Variants for LOC100422710 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100422710 Gene

Disorders for LOC100422710 Gene

No disorders were found for LOC100422710 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100422710 Gene

Publications for LOC100422710 Gene

No publications were found for LOC100422710 Gene.

No data available for External Links for LOC100422710 Gene

Products for LOC100422710 Gene

Sources for LOC100422710 Gene

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