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Aliases for LOC100422556 Gene

Aliases for LOC100422556 Gene

  • LEO1 Homolog, Paf1/RNA Polymerase II Complex Component Pseudogene 3
  • Leo1, Paf1/RNA Polymerase II Complex Component, Homolog (S. Cerevisiae) Pseudogene 3
  • Leo1 Paf1/RNA Polymerase II Complex Component Pseudogene 3
  • AC090971.3 5

External Ids for LOC100422556 Gene

Previous GeneCards Identifiers for LOC100422556 Gene

  • GC15U901242
  • GC15M052216
  • GC15M053499
  • GC15M054146
  • GC15M052408
  • GC15M052679
  • GC15M054045
  • GC15M054926
  • GC15M055366
  • GC15M055814
  • GC15M056251
  • GC15M056696

Summaries for LOC100422556 Gene

GeneCards Summary for LOC100422556 Gene

LOC100422556 (LEO1 Homolog, Paf1/RNA Polymerase II Complex Component Pseudogene) is a Pseudogene.

Additional gene information for LOC100422556 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100422556 Gene

Genomics for LOC100422556 Gene

GeneHancer (GH) Regulatory Elements for LOC100422556 Gene

Promoters and enhancers for LOC100422556 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J051828 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 6.9 +100.6 100594 4 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 TMOD3 MAPK6 LYSMD2 LOC100422556 DMXL2 GNB5 ENSG00000274954
GH15J051862 Enhancer 0.8 ENCODE dbSUPER 11 +66.3 66281 2.9 RXRA ZNF266 YY1 SP1 OSR2 JUND HMBOX1 HNF4A LYSMD2 TMOD3 ENSG00000259935 ENSG00000260618 AP4E1 LOC100422556 FAM214A ENSG00000259712 LOC100422490 GC15P051886
GH15J051935 Enhancer 0.9 FANTOM5 ENCODE 0.4 -5.4 -5383 0.8 CTCF ZBTB40 BATF IRF4 RELA EED ATF7 BCLAF1 RUNX3 JUNB LYSMD2 LEO1 TMOD3 GNB5 DMXL2 LOC100422556 GC15P051928 MAPK6
GH15J051943 Enhancer 0.4 FANTOM5 0.4 -13.2 -13164 0 HLF LEO1 GNB5 MAPK6 DMXL2 LOC100422556 TMOD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100422556 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100422556 Gene

Genomic Locations for LOC100422556 Gene
chr15:51,918,963-51,930,627
(GRCh38/hg38)
Size:
11,665 bases
Orientation:
Minus strand
chr15:52,211,270-52,222,824
(GRCh37/hg19)
Size:
11,555 bases
Orientation:
Minus strand

Genomic View for LOC100422556 Gene

Genes around LOC100422556 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100422556 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100422556 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100422556 Gene

Proteins for LOC100422556 Gene

Post-translational modifications for LOC100422556 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100422556 Gene

Domains & Families for LOC100422556 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100422556 Gene

Function for LOC100422556 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100422556 Gene

Localization for LOC100422556 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100422556 Gene

Pathways & Interactions for LOC100422556 Gene

SuperPathways for LOC100422556 Gene

No Data Available

Interacting Proteins for LOC100422556 Gene

Gene Ontology (GO) - Biological Process for LOC100422556 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100422556 Gene

Drugs & Compounds for LOC100422556 Gene

No Compound Related Data Available

Transcripts for LOC100422556 Gene

mRNA/cDNA for LOC100422556 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100422556 Gene

No ASD Table

Relevant External Links for LOC100422556 Gene

GeneLoc Exon Structure for
LOC100422556

Expression for LOC100422556 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100422556 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100422556 Gene

This gene is overexpressed in Heart - Left Ventricle (x4.8), Heart - Atrial Appendage (x4.4), and Testis (x4.3).
genes like me logo Genes that share expression patterns with LOC100422556: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100422556 Gene

Orthologs for LOC100422556 Gene

Evolution for LOC100422556 Gene

ENSEMBL:
Gene Tree for LOC100422556 (if available)
TreeFam:
Gene Tree for LOC100422556 (if available)

No data available for Orthologs for LOC100422556 Gene

Paralogs for LOC100422556 Gene

No data available for Paralogs for LOC100422556 Gene

Variants for LOC100422556 Gene

Sequence variations from dbSNP and Humsavar for LOC100422556 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000051527 -- 51,924,447(-) A/C upstream_transcript_variant
rs1000691366 -- 51,920,863(-) C/T intron_variant
rs1002107408 -- 51,925,870(-) C/T upstream_transcript_variant
rs1002392819 -- 51,925,879(-) G/A upstream_transcript_variant
rs1002445670 -- 51,919,807(-) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100422556 Gene

Variant ID Type Subtype PubMed ID
nsv569409 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100422556 Gene

Disorders for LOC100422556 Gene

Additional Disease Information for LOC100422556

No disorders were found for LOC100422556 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100422556 Gene

Publications for LOC100422556 Gene

No publications were found for LOC100422556 Gene.

Products for LOC100422556 Gene

Sources for LOC100422556 Gene

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