Aliases for LOC100422537 Gene

Aliases for LOC100422537 Gene

  • Signal Sequence Receptor Subunit 3 Pseudogene 3
  • Signal Sequence Receptor, Gamma (Translocon-Associated Protein Gamma) (SSR3) Pseudogene 5
  • Signal Sequence Receptor, Gamma (Translocon-Associated Protein Gamma) Pseudogene 3
  • AC103591.1 5

External Ids for LOC100422537 Gene

Previous GeneCards Identifiers for LOC100422537 Gene

  • GC01U902867
  • GC01P078558

Summaries for LOC100422537 Gene

GeneCards Summary for LOC100422537 Gene

LOC100422537 (Signal Sequence Receptor Subunit 3 Pseudogene) is a Pseudogene.

Additional gene information for LOC100422537 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100422537 Gene

Genomics for LOC100422537 Gene

GeneHancer (GH) Regulatory Elements for LOC100422537 Gene

Promoters and enhancers for LOC100422537 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J078090 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 500.7 +0.9 902 3.2 EP300 CTBP1 NFRKB BRCA1 FOS POLR2G CEBPB RBBP5 CHD2 JUN LOC100422537 GIPC2 RF00001-007 RNA5SP22
GH01J078044 Promoter/Enhancer 1.5 EPDnew Ensembl ENCODE 11.9 -45.2 -45166 3.7 POLR2G NCOR1 SKI HDAC2 POLR2A EZH2 KMT2B NR2F2 PCBP1 CTCF GIPC2 HSALNG0004615 RNU6-1102P LOC100422537 NEXN
GH01J078061 Enhancer 1 Ensembl ENCODE dbSUPER 12.1 -29.6 -29558 1.8 ZSCAN5C CTCF BCL11A SPI1 BATF IRF4 STAT5A STAT1 JUNB NFATC1 LOC100422537 RNU6-1102P NEXN FUBP1 HSALNG0004615 GIPC2
GH01J078055 Enhancer 1 Ensembl ENCODE dbSUPER 11.6 -35.8 -35798 1.4 RELA IRF1 IRF2 GATA3 NR2F1 ELF1 GATA2 ELF4 TAF7 YY1 RNU6-1102P LOC100422537 GIPC2 NEXN HSALNG0004615
GH01J077926 Promoter 0.8 Ensembl 11.1 -164.4 -164398 2.2 CEBPG IRF1 ATF4 JUNB NFIC CBX5 L3MBTL2 SPI1 MYC CDC5L GIPC2 RNU6-1102P LOC100422537 MIGA1 RNA5SP21 ACTG1P21 NEXN RF00017-254 NONHSAG001877.2 lnc-FUBP1-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100422537 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100422537 Gene

Genomic Locations for LOC100422537 Gene
chr1:78,091,499-78,092,054
(GRCh38/hg38)
Size:
556 bases
Orientation:
Plus strand
chr1:78,557,183-78,557,738
(GRCh37/hg19)
Size:
556 bases
Orientation:
Plus strand

Genomic View for LOC100422537 Gene

Genes around LOC100422537 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100422537 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100422537 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100422537 Gene

Proteins for LOC100422537 Gene

Post-translational modifications for LOC100422537 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100422537 Gene

Domains & Families for LOC100422537 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100422537 Gene

Function for LOC100422537 Gene

Phenotypes From GWAS Catalog for LOC100422537 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100422537 Gene

Localization for LOC100422537 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100422537 Gene

Pathways & Interactions for LOC100422537 Gene

PathCards logo

SuperPathways for LOC100422537 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100422537 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100422537 Gene

Drugs & Compounds for LOC100422537 Gene

No Compound Related Data Available

Transcripts for LOC100422537 Gene

mRNA/cDNA for LOC100422537 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100422537 Gene

No ASD Table

Relevant External Links for LOC100422537 Gene

GeneLoc Exon Structure for
LOC100422537

Expression for LOC100422537 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100422537 Gene

genes like me logo Genes that share expression patterns with LOC100422537: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100422537 Gene

Orthologs for LOC100422537 Gene

Evolution for LOC100422537 Gene

ENSEMBL:
Gene Tree for LOC100422537 (if available)
TreeFam:
Gene Tree for LOC100422537 (if available)

No data available for Orthologs for LOC100422537 Gene

Paralogs for LOC100422537 Gene

No data available for Paralogs for LOC100422537 Gene

Variants for LOC100422537 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100422537 Gene

Disorders for LOC100422537 Gene

No disorders were found for LOC100422537 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100422537 Gene

Publications for LOC100422537 Gene

No publications were found for LOC100422537 Gene.

No data available for Mastermind for LOC100422537 Gene

Products for LOC100422537 Gene

Sources for LOC100422537 Gene