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Aliases for LOC100422352 Gene
Aliases for LOC100422352 Gene
External Ids for LOC100422352 Gene
- Entrez Gene: 100422352
Previous GeneCards Identifiers for LOC100422352 Gene
- GC12U901472
- GC12P030607
Summaries for LOC100422352 Gene
GeneCards Summary for LOC100422352 Gene
LOC100422352 (Transmembrane O-Mannosyltransferase Targeting Cadherins 1 Pseudogene) is a Pseudogene.
Additional gene information for LOC100422352 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100422352 Gene
Genomics for LOC100422352 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100422352 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J030457 | Enhancer | 0.9 | Ensembl ENCODE | 0.7 | +2.7 | 2715 | 0.9 | CTCF ZNF629 IKZF1 JUND REST SCRT2 ZXDB CTBP1 JUN ATF3 | ENSG00000258202 LOC100422352 lnc-TSPAN11-11 RF00994-224 IPO8 TMTC1 | |
| GH12J030437 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | -17.2 | -17227 | 1.4 | GATAD2A SP1 CEBPA SOX13 FOXA2 ATF3 YY1 GABPA ZBTB33 TEAD1 | piR-49322-124 ENSG00000258202 LOC100422352 lnc-TSPAN11-11 IPO8 TMTC1 | |
| GH12J030508 | Enhancer | 0.9 | ENCODE | 0.2 | +53.7 | 53724 | 0.2 | GATAD2A TFE3 SOX13 IKZF1 NFKBIZ RCOR2 RXRB IRF2 SP1 DPF2 | lnc-IPO8-2 RF00017-1121 LOC100422352 IPO8 TMTC1 | |
| GH12J030518 | Enhancer | 0.8 | Ensembl ENCODE | 0.2 | +63.9 | 63926 | 2 | ZNF7 SOX13 TCF7 FOXA2 FOXP1 SPI1 FOSL2 RARA ZBTB33 ZFX | lnc-IPO8-2 RF00017-1121 LOC100422352 IPO8 TMTC1 | |
| GH12J030462 | Enhancer | 0.3 | Ensembl | 0.4 | +7.6 | 7582 | 0.2 | KDM1A | RF00994-224 ENSG00000258202 LOC100422352 lnc-TSPAN11-11 IPO8 TMTC1 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100422352 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC100422352 Gene
Genomic Locations for LOC100422352 Gene
- chr12:30,454,919-30,520,453
- (GRCh38/hg38)
- Size:
- 65,535 bases
- Orientation:
- Plus strand
- chr12:30,607,852-30,673,386
- (GRCh37/hg19)
- Size:
- 65,535 bases
- Orientation:
- Plus strand
Genomic View for LOC100422352 Gene
Genes around LOC100422352 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p11.22-p11.21 by Entrez Gene
LOC100422352 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100422352 Gene
Proteins for LOC100422352 Gene
Post-translational modifications for LOC100422352 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100422352
- Origene Custom Protein Services for LOC100422352
No data available for DME Specific Peptides for LOC100422352 Gene
Domains & Families for LOC100422352 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100422352 Gene
Function for LOC100422352 Gene
Phenotypes From GWAS Catalog for LOC100422352 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100422352 Gene
Localization for LOC100422352 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100422352 Gene
Transcripts for LOC100422352 Gene
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100422352 Gene
- GeneLoc Exon Structure for
- LOC100422352
No data available for mRNA/cDNA for LOC100422352 Gene
Expression for LOC100422352 Gene
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100422352 Gene
Orthologs for LOC100422352 Gene
No data available for Orthologs and Evolution for LOC100422352 Gene
Paralogs for LOC100422352 Gene
No data available for Paralogs for LOC100422352 Gene
Variants for LOC100422352 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100422352 Gene
Disorders for LOC100422352 Gene
No disorders were found for LOC100422352 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100422352 Gene
Publications for LOC100422352 Gene
No publications were found for LOC100422352 Gene.
No data available for Mastermind for LOC100422352 Gene
Products for LOC100422352 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100422352
- Origene Custom Protein Services for LOC100422352
- Browse OriGene Inhibitory RNA Products For LOC100422352
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100422352
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100422352
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100422352
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100422352
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100422352
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100422352
Sources for LOC100422352 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB