LOC100422352 Gene (Pseudogene)

Transmembrane O-Mannosyltransferase Targeting Cadherins 1 Pseudogene

GC12P030454
GIFtS:
2
See more...

Aliases for LOC100422352 Gene

Aliases for LOC100422352 Gene

  • Transmembrane O-Mannosyltransferase Targeting Cadherins 1 Pseudogene 3
  • Transmembrane And Tetratricopeptide Repeat Containing 1 Pseudogene 3

External Ids for LOC100422352 Gene

Previous GeneCards Identifiers for LOC100422352 Gene

  • GC12U901472
  • GC12P030607

Summaries for LOC100422352 Gene

GeneCards Summary for LOC100422352 Gene

LOC100422352 (Transmembrane O-Mannosyltransferase Targeting Cadherins 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100422352 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100422352 Gene

Genomics for LOC100422352 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100422352 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J030457 Enhancer 0.7 ENCODE 0.7 +2.9 2914 0.2 FEZF1 IKZF1 CTCF REST RAD21 CTBP1 JUND FOSL1 PRDM6 ZFP37 ENSG00000258202 LOC100422352 lnc-TSPAN11-11 RF00994-224 lnc-IPO8-2 HSALNG0090127 IPO8 TMTC1
GH12J030458 Enhancer 0.7 Ensembl 0.7 +2.5 2482 0.4 FEZF1 CTBP1 FOSL1 PRDM6 ZFP37 JUND CTCF ZNF189 SP7 ARID1B ENSG00000258202 LOC100422352 lnc-TSPAN11-11 RF00994-224 lnc-IPO8-2 HSALNG0090127 IPO8 TMTC1
GH12J030508 Enhancer 0.9 ENCODE 0.2 +53.7 53724 0.2 CEBPA FOXA1 IKZF1 HOMEZ KDM6A THAP11 FOXA2 ZNF511 SMAD4 SAP130 lnc-IPO8-2 MK280073-107 LOC100422352 IPO8 TMTC1
GH12J030518 Enhancer 0.8 Ensembl ENCODE 0.2 +63.9 63926 2 FOXA2 RARA FOXP1 SPI1 SOX5 HMG20A ZBTB33 L3MBTL2 GABPB1 HLF MK280073-107 lnc-IPO8-2 LOC100422352 IPO8 TMTC1
GH12J030462 Enhancer 0.3 Ensembl 0.4 +7.6 7582 0.2 KDM1A RF00994-224 ENSG00000258202 LOC100422352 lnc-TSPAN11-11 lnc-IPO8-2 HSALNG0090127 IPO8 TMTC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100422352 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100422352 Gene

Latest Assembly
chr12:30,454,919-30,520,453
(GRCh38/hg38)
Size:
65,535 bases
Orientation:
Plus strand

Previous Assembly
chr12:30,607,852-30,673,386
(GRCh37/hg19 by Entrez Gene)
Size:
65,535 bases
Orientation:
Plus strand

Genomic View for LOC100422352 Gene

Genes around LOC100422352 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100422352 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100422352 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100422352 Gene

Proteins for LOC100422352 Gene

Products:

  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LOC100422352 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100422352 Gene

Domains & Families for LOC100422352 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100422352 Gene

Function for LOC100422352 Gene

Products:

  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

Phenotypes From GWAS Catalog for LOC100422352 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100422352 Gene

Localization for LOC100422352 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100422352 Gene

Pathways & Interactions for LOC100422352 Gene

PathCards logo

SuperPathways for LOC100422352 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100422352 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100422352 Gene

Drugs & Compounds for LOC100422352 Gene

Products:

  1. Drug products for research
No Compound Related Data Available

Transcripts for LOC100422352 Gene

Products:

  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100422352 Gene

No ASD Table

Relevant External Links for LOC100422352 Gene

GeneLoc Exon Structure for
LOC100422352

No data available for mRNA/cDNA for LOC100422352 Gene

Expression for LOC100422352 Gene

Products:

  1. Primer products for research

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100422352 Gene

mRNA expression in normal human tissues for LOC100422352 Gene
mRNA expression by GTEx for LOC100422352 Gene
genes like me logo Genes that share expression patterns with LOC100422352: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100422352 Gene

Orthologs for LOC100422352 Gene

No data available for Orthologs and Evolution for LOC100422352 Gene

Paralogs for LOC100422352 Gene

No data available for Paralogs for LOC100422352 Gene

Variants for LOC100422352 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100422352 Gene

Disorders for LOC100422352 Gene

No disorders were found for LOC100422352 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100422352 Gene

Publications for LOC100422352 Gene

No publications were found for LOC100422352 Gene.

No data available for Mastermind for LOC100422352 Gene

Products for LOC100422352 Gene

Sources for LOC100422352 Gene