LOC100421517 Gene (Pseudogene)

DnaJ Heat Shock Protein Family (Hsp40) Member C17 Pseudogene

GC06P047597
GIFtS:
1
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Aliases for LOC100421517 Gene

Aliases for LOC100421517 Gene

  • DnaJ Heat Shock Protein Family (Hsp40) Member C17 Pseudogene 3
  • DnaJ (Hsp40) Homolog, Subfamily C, Member 17 Pseudogene 3

External Ids for LOC100421517 Gene

Previous GeneCards Identifiers for LOC100421517 Gene

  • GC06U901955
  • GC06P047565

Summaries for LOC100421517 Gene

GeneCards Summary for LOC100421517 Gene

LOC100421517 (DnaJ Heat Shock Protein Family (Hsp40) Member C17 Pseudogene) is a Pseudogene.

Additional gene information for LOC100421517 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100421517 Gene

Genomics for LOC100421517 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100421517 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH06J047605 Enhancer 0.5 Ensembl 0.4 +8.2 8244 0.8 NR2F6 NFIB NR2F2 NR2F1 NFIC HSALNG0050422 LOC100421517 ADGRF2 CD2AP
GH06J047588 Enhancer 0.2 Ensembl 0.4 -9.7 -9656 0.2 OPN5 LOC100421517 piR-38580-282 ADGRF2 CD2AP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100421517 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100421517 Gene

Latest Assembly
chr6:47,597,157-47,597,943
(GRCh38/hg38)
Size:
787 bases
Orientation:
Plus strand

Previous Assembly
chr6:47,564,893-47,565,679
(GRCh37/hg19 by Entrez Gene)
Size:
787 bases
Orientation:
Plus strand

Genomic View for LOC100421517 Gene

Genes around LOC100421517 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100421517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100421517 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100421517 Gene

Proteins for LOC100421517 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LOC100421517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100421517 Gene

Domains & Families for LOC100421517 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100421517 Gene

Function for LOC100421517 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100421517 Gene

Localization for LOC100421517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100421517 Gene

Pathways & Interactions for LOC100421517 Gene

PathCards logo

SuperPathways for LOC100421517 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100421517 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100421517 Gene

Drugs & Compounds for LOC100421517 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LOC100421517 Gene

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  1. CRISPR products for research
  2. miRNA products for research
  3. Inhibitory RNAs for research
  4. Clone products for research

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100421517 Gene

No ASD Table

Relevant External Links for LOC100421517 Gene

GeneLoc Exon Structure for
LOC100421517

No data available for mRNA/cDNA for LOC100421517 Gene

Expression for LOC100421517 Gene

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  1. Primer products for research
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100421517 Gene

Orthologs for LOC100421517 Gene

No data available for Orthologs and Evolution for LOC100421517 Gene

Paralogs for LOC100421517 Gene

No data available for Paralogs for LOC100421517 Gene

Variants for LOC100421517 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100421517 Gene

Disorders for LOC100421517 Gene

No disorders were found for LOC100421517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100421517 Gene

Publications for LOC100421517 Gene

No publications were found for LOC100421517 Gene.

No data available for Mastermind for LOC100421517 Gene

Products for LOC100421517 Gene

Sources for LOC100421517 Gene