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Aliases for LOC100421483 Gene

Aliases for LOC100421483 Gene

  • Transforming Growth Factor Beta Receptor 1 Pseudogene 3

External Ids for LOC100421483 Gene

Previous GeneCards Identifiers for LOC100421483 Gene

  • GC19U901316

Summaries for LOC100421483 Gene

GeneCards Summary for LOC100421483 Gene

LOC100421483 (Transforming Growth Factor Beta Receptor 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100421483 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100421483 Gene

Genomics for LOC100421483 Gene

GeneHancer (GH) Regulatory Elements for LOC100421483 Gene

Promoters and enhancers for LOC100421483 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J006527 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.3 +23.6 23602 6.6 ZNF473 SP1 ELF3 CC2D1A ZFX ZNF148 NKRF POLR2A MLLT1 GTF2F1 TNFSF9 ZNF557 KHSRP DUS3L SAFB SAFB2 SNRPEP4 RANBP3 GTF2F1 ENSG00000267571
GH19J006551 Enhancer 0.9 ENCODE 0.7 +2.5 2464 1 SP1 ZNF148 NKRF ZNF687 RELA CREM EGR1 IKZF1 POLR2A GMEB1 ENSG00000268742 LOC100421483 TNFSF9
GH19J006535 Enhancer 1.1 Ensembl ENCODE 0.4 +17.0 16992 3.8 SP1 CBFA2T2 ZNF687 FOS CREM MLLT1 IKZF1 CREB1 POLR2A BACH1 KHSRP ZNF557 RANBP3 SNRPEP4 SAFB DUS3L ENSG00000267571 TNFSF9 LOC100421483
GH19J006543 Enhancer 0.7 ENCODE 0.4 +10.5 10522 0.2 SP1 RELA CREM MLLT1 IKZF1 IKZF2 CBFB DPF2 EED RUNX3 LOC100421483 TNFSF9
GH19J006534 Enhancer 0.4 ENCODE 0.4 +19.9 19862 0.2 BACH1 LARP7 ZBTB33 TNFSF9 LOC100421483
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100421483 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100421483 Gene

Genomic Locations for LOC100421483 Gene
chr19:6,553,753-6,554,487
(GRCh38/hg38)
Size:
735 bases
Orientation:
Minus strand
chr19:6,552,369-6,554,505
(GRCh37/hg19)
Size:
2,137 bases
Orientation:
Minus strand

Genomic View for LOC100421483 Gene

Genes around LOC100421483 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100421483 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100421483 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100421483 Gene

Proteins for LOC100421483 Gene

Post-translational modifications for LOC100421483 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100421483 Gene

Domains & Families for LOC100421483 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100421483 Gene

Function for LOC100421483 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100421483 Gene

Localization for LOC100421483 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100421483 Gene

Pathways & Interactions for LOC100421483 Gene

PathCards logo

SuperPathways for LOC100421483 Gene

No Data Available

Interacting Proteins for LOC100421483 Gene

Gene Ontology (GO) - Biological Process for LOC100421483 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100421483 Gene

Drugs & Compounds for LOC100421483 Gene

No Compound Related Data Available

Transcripts for LOC100421483 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100421483 Gene

No ASD Table

Relevant External Links for LOC100421483 Gene

GeneLoc Exon Structure for
LOC100421483

No data available for mRNA/cDNA for LOC100421483 Gene

Expression for LOC100421483 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100421483 Gene

genes like me logo Genes that share expression patterns with LOC100421483: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100421483 Gene

Orthologs for LOC100421483 Gene

No data available for Orthologs and Evolution for LOC100421483 Gene

Paralogs for LOC100421483 Gene

No data available for Paralogs for LOC100421483 Gene

Variants for LOC100421483 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100421483 Gene

Disorders for LOC100421483 Gene

No disorders were found for LOC100421483 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100421483 Gene

Publications for LOC100421483 Gene

No publications were found for LOC100421483 Gene.

No data available for External Links for LOC100421483 Gene

Products for LOC100421483 Gene

Sources for LOC100421483 Gene

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