Aliases for LOC100421401 Gene

Aliases for LOC100421401 Gene

  • Guanylate Binding Protein Family Member 6 Pseudogene 3

External Ids for LOC100421401 Gene

Previous GeneCards Identifiers for LOC100421401 Gene

  • GC01U902921
  • GC01P089703

Summaries for LOC100421401 Gene

GeneCards Summary for LOC100421401 Gene

LOC100421401 (Guanylate Binding Protein Family Member 6 Pseudogene) is a Pseudogene.

Additional gene information for LOC100421401 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100421401 Gene

Genomics for LOC100421401 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100421401 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J089269 Promoter/Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +35.1 35120 6.3 CEBPB EP300 RXRA MYC JUND MAX RAD21 ATF2 ATF4 HNF4A GBP5 MN296824 piR-30449-006 piR-39098-006 GBP1 GBP4 GBP2 GTF2B GBP3 LRRC8C
GH01J089259 Promoter/Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +23.8 23827 4 FEZF1 TRIM28 ZBTB17 EP300 ENSG00000237568 lnc-GBP4-1 GBP3 GBP7 GBP5 LOC100421401 GBP4
GH01J089284 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.3 +49.0 49016 3.4 MAFF ZNF316 BATF MAFK HNF4A MAFG JUNB MAX SP1 HNF4G GBP1 GBP5 GBP4 GBP2 GBP6 GTF2B LRRC8C GBP3 ENSG00000238081 HSALNG0005055
GH01J089254 Enhancer 0.6 Ensembl 0.4 +17.6 17634 0.6 PRDM6 ATF2 ZBTB21 ZNF133 ZEB2 ZNF629 OSR2 ZNF660 ZBTB17 PRDM10 GBP4 GBP7 GBP5 ENSG00000237568 LOC100421401
GH01J089277 Enhancer 0.8 FANTOM5 ENCODE dbSUPER 0.3 +41.7 41743 2.8 SP7 PKNOX1 GBP1 GBP5 GBP4 GBP2 GBP7 GTF2B LRRC8C KYAT3 GBP3 MN296824
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100421401 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100421401 Gene

Latest Assembly
chr1:89,237,424-89,302,958
(GRCh38/hg38)
Size:
65,535 bases
Orientation:
Plus strand

Previous Assembly
chr1:89,703,107-89,768,641
(GRCh37/hg19 by Entrez Gene)
Size:
65,535 bases
Orientation:
Plus strand

Genomic View for LOC100421401 Gene

Genes around LOC100421401 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100421401 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100421401 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100421401 Gene

Proteins for LOC100421401 Gene

Post-translational modifications for LOC100421401 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100421401 Gene

Domains & Families for LOC100421401 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100421401 Gene

Function for LOC100421401 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100421401 Gene

Localization for LOC100421401 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100421401 Gene

Pathways & Interactions for LOC100421401 Gene

PathCards logo

SuperPathways for LOC100421401 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100421401 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100421401 Gene

Drugs & Compounds for LOC100421401 Gene

No Compound Related Data Available

Transcripts for LOC100421401 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100421401 Gene

No ASD Table

Relevant External Links for LOC100421401 Gene

GeneLoc Exon Structure for
LOC100421401

No data available for mRNA/cDNA for LOC100421401 Gene

Expression for LOC100421401 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100421401 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100421401 Gene

This gene is overexpressed in Whole Blood (x19.5) and Spleen (x6.8).
genes like me logo Genes that share expression patterns with LOC100421401: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100421401 Gene

Orthologs for LOC100421401 Gene

No data available for Orthologs and Evolution for LOC100421401 Gene

Paralogs for LOC100421401 Gene

No data available for Paralogs for LOC100421401 Gene

Variants for LOC100421401 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100421401 Gene

Disorders for LOC100421401 Gene

No disorders were found for LOC100421401 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100421401 Gene

Publications for LOC100421401 Gene

No publications were found for LOC100421401 Gene.

No data available for Mastermind for LOC100421401 Gene

Products for LOC100421401 Gene

Sources for LOC100421401 Gene