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Aliases for LOC100421336 Gene

Subcategory (RNA class) for LOC100421336 Gene

lncRNA

Aliases for LOC100421336 Gene

  • RAB3A Interacting Protein Like 1 Pseudogene 3
  • AC006195.1 5

External Ids for LOC100421336 Gene

ORGUL Members for LOC100421336 Gene

Previous GeneCards Identifiers for LOC100421336 Gene

  • GC07U902977

Summaries for LOC100421336 Gene

GeneCards Summary for LOC100421336 Gene

LOC100421336 (RAB3A Interacting Protein Like 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100421336 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100421336 Gene

Genomics for LOC100421336 Gene

GeneHancer (GH) Regulatory Elements for LOC100421336 Gene

Promoters and enhancers for LOC100421336 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I033798 Enhancer 0.4 ENCODE 4.1 +419.3 419257 0.8 ATF7 ATF2 LOC100421336 GC07M033786 ENSG00000236494
GH07I033418 Enhancer 0.5 ENCODE 0.3 +38.4 38443 0.6 CTBP1 PKNOX1 FEZF1 ZIC2 ZNF843 ZNF423 GC07M033431 LOC100421336 BBS9
GH07I033351 Enhancer 0.4 ENCODE 0.3 -28.1 -28050 1.1 ZNF680 POLR2A BBS9 LOC100421336 ENSG00000224946
GH07I033452 Enhancer 0.6 ENCODE 0.2 +73.1 73077 1.2 FOXA2 FOXA3 MAFG ZNF644 ZNF316 NFE2 FOS NR2F6 HOMEZ MAFK BBS9 GC07M033431 LOC100421336
GH07I033356 Enhancer 0.2 ENCODE 0.3 -23.3 -23325 0.2 LOC100421336 ENSG00000224946 BBS9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100421336 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100421336 Gene

Genomic Locations for LOC100421336 Gene
chr7:33,379,949-33,380,886
(GRCh38/hg38)
Size:
938 bases
Orientation:
Plus strand
chr7:33,419,561-33,420,478
(GRCh37/hg19)

Genomic View for LOC100421336 Gene

Genes around LOC100421336 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100421336 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100421336 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100421336 Gene

Proteins for LOC100421336 Gene

Post-translational modifications for LOC100421336 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100421336 Gene

Domains & Families for LOC100421336 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100421336 Gene

Function for LOC100421336 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100421336 Gene

Localization for LOC100421336 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100421336 Gene

Pathways & Interactions for LOC100421336 Gene

SuperPathways for LOC100421336 Gene

No Data Available

Interacting Proteins for LOC100421336 Gene

Gene Ontology (GO) - Biological Process for LOC100421336 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100421336 Gene

Drugs & Compounds for LOC100421336 Gene

No Compound Related Data Available

Transcripts for LOC100421336 Gene

mRNA/cDNA for LOC100421336 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100421336 Gene

No ASD Table

Relevant External Links for LOC100421336 Gene

GeneLoc Exon Structure for
LOC100421336

Expression for LOC100421336 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100421336 Gene

genes like me logo Genes that share expression patterns with LOC100421336: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100421336 Gene

Orthologs for LOC100421336 Gene

Evolution for LOC100421336 Gene

ENSEMBL:
Gene Tree for LOC100421336 (if available)
TreeFam:
Gene Tree for LOC100421336 (if available)

No data available for Orthologs for LOC100421336 Gene

Paralogs for LOC100421336 Gene

No data available for Paralogs for LOC100421336 Gene

Variants for LOC100421336 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100421336 Gene

Disorders for LOC100421336 Gene

Additional Disease Information for LOC100421336

No disorders were found for LOC100421336 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100421336 Gene

Publications for LOC100421336 Gene

No publications were found for LOC100421336 Gene.

Products for LOC100421336 Gene

Sources for LOC100421336 Gene

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