Aliases for LOC100420896 Gene

Aliases for LOC100420896 Gene

  • Putative UPF0607 Protein FLJ37424 Pseudogene 3
  • UPF0607 Protein ENSP00000381418-Like Pseudogene 3

External Ids for LOC100420896 Gene

Previous GeneCards Identifiers for LOC100420896 Gene

  • GC09U901579
  • GC09P094867

Summaries for LOC100420896 Gene

GeneCards Summary for LOC100420896 Gene

LOC100420896 (Putative UPF0607 Protein FLJ37424 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420896 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100420896 Gene

Genomics for LOC100420896 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100420896 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J092103 Enhancer 0.2 FANTOM5 600.7 -0.1 -61 0.1 ENSG00000275756 LOC100420896 SPTLC1 lnc-IARS-2 piR-45012-539 ROR2
GH09J092096 Promoter/Enhancer 1.1 ENCODE CraniofacialAtlas 0.7 -4.7 -4694 5.6 BACH1 ZHX2 IKZF2 RCOR1 SP1 YY1 POLR2A PAX8 RFX1 RELB ROR2 SPTLC1 FGD3 LOC100420896 piR-45012-539 lnc-IARS-2
GH09J092092 Enhancer 0.2 Ensembl 0.4 -11.4 -11424 0.2 piR-45012-539 LOC100420896 lnc-IARS-2 SPTLC1 ROR2
GH09J092093 Enhancer 0.2 Ensembl 0.4 -10.6 -10624 1 SPTLC1 piR-45012-539 LOC100420896 lnc-IARS-2 ROR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100420896 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100420896 Gene

Genomic Locations for LOC100420896 Gene
chr9:92,104,125-92,105,651
(GRCh38/hg38)
Size:
1,527 bases
Orientation:
Plus strand
chr9:94,866,707-94,867,730
(GRCh37/hg19)
Size:
1,024 bases
Orientation:
Plus strand

Genomic View for LOC100420896 Gene

Genes around LOC100420896 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420896 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420896 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420896 Gene

Proteins for LOC100420896 Gene

Post-translational modifications for LOC100420896 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420896 Gene

Domains & Families for LOC100420896 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100420896 Gene

Function for LOC100420896 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420896 Gene

Localization for LOC100420896 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420896 Gene

Pathways & Interactions for LOC100420896 Gene

PathCards logo

SuperPathways for LOC100420896 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100420896 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100420896 Gene

Drugs & Compounds for LOC100420896 Gene

No Compound Related Data Available

Transcripts for LOC100420896 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420896 Gene

No ASD Table

Relevant External Links for LOC100420896 Gene

GeneLoc Exon Structure for
LOC100420896

No data available for mRNA/cDNA for LOC100420896 Gene

Expression for LOC100420896 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420896 Gene

Orthologs for LOC100420896 Gene

No data available for Orthologs and Evolution for LOC100420896 Gene

Paralogs for LOC100420896 Gene

No data available for Paralogs for LOC100420896 Gene

Variants for LOC100420896 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420896 Gene

Disorders for LOC100420896 Gene

No disorders were found for LOC100420896 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420896 Gene

Publications for LOC100420896 Gene

No publications were found for LOC100420896 Gene.

No data available for Mastermind for LOC100420896 Gene

Products for LOC100420896 Gene

Sources for LOC100420896 Gene