Aliases for LOC100420658 Gene

Aliases for LOC100420658 Gene

  • Post-GPI Attachment To Proteins 2 Pseudogene 3
  • Post-GPI Attachment To Proteins 2 (PGAP2) Pseudogene 5
  • AL606495.1 5

External Ids for LOC100420658 Gene

Previous GeneCards Identifiers for LOC100420658 Gene

  • GC01U902942

Summaries for LOC100420658 Gene

GeneCards Summary for LOC100420658 Gene

LOC100420658 (Post-GPI Attachment To Proteins 2 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420658 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100420658 Gene

Genomics for LOC100420658 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100420658 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J165912 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +28.1 28062 1.8 GATAD2A CTCF JUND PRDM1 PHF21A REST RAD21 TRIM22 CEBPA CEBPB UCK2 ENSG00000236364 FAM78B-AS1 LOC100420658 lnc-TMCO1-5 TMCO1 FAM78B
GH01J165924 Enhancer 0.6 Ensembl 0.4 +16.6 16569 0.4 CTCF ZNF143 REST RAD21 TRIM22 TCF12 SMC3 ZKSCAN1 ZBTB5 TFAP4 ENSG00000236364 UCK2 ENSG00000230898 FAM78B FAM78B-AS1 LOC100420658 lnc-TMCO1-5 TMCO1
GH01J165915 Enhancer 0.8 Ensembl ENCODE dbSUPER 0.3 +26.0 26042 1.3 SOX13 CEBPB PRDM4 ZBTB8A ENSG00000236364 FAM78B-AS1 UCK2 LOC100420658 lnc-TMCO1-5 TMCO1 FAM78B
GH01J165955 Enhancer 0.5 ENCODE 0.4 -13.6 -13589 0.6 EED RUNX3 WT1 POLR2A SMARCA4 EGR2 EZH2 ENSG00000236364 LOC100420658 lnc-TMCO1-5 RF00994-062 FAM78B-AS1 TMCO1 FAM78B
GH01J165933 Enhancer 0.4 Ensembl 0.4 +7.9 7868 1.4 GLIS1 SMARCA4 KLF1 UCK2 FAM78B-AS1 LOC100420658 lnc-TMCO1-5 TMCO1 FAM78B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100420658 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100420658 Gene

Genomic Locations for LOC100420658 Gene
chr1:165,941,235-165,941,769
(GRCh38/hg38)
Size:
535 bases
Orientation:
Minus strand
chr1:165,910,472-165,911,006
(GRCh37/hg19)
Size:
535 bases
Orientation:
Minus strand

Genomic View for LOC100420658 Gene

Genes around LOC100420658 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420658 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420658 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420658 Gene

Proteins for LOC100420658 Gene

Post-translational modifications for LOC100420658 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420658 Gene

Domains & Families for LOC100420658 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100420658 Gene

Function for LOC100420658 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420658 Gene

Localization for LOC100420658 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420658 Gene

Pathways & Interactions for LOC100420658 Gene

PathCards logo

SuperPathways for LOC100420658 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100420658 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100420658 Gene

Drugs & Compounds for LOC100420658 Gene

No Compound Related Data Available

Transcripts for LOC100420658 Gene

mRNA/cDNA for LOC100420658 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420658 Gene

No ASD Table

Relevant External Links for LOC100420658 Gene

GeneLoc Exon Structure for
LOC100420658

Expression for LOC100420658 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100420658 Gene

genes like me logo Genes that share expression patterns with LOC100420658: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420658 Gene

Orthologs for LOC100420658 Gene

Evolution for LOC100420658 Gene

ENSEMBL:
Gene Tree for LOC100420658 (if available)
TreeFam:
Gene Tree for LOC100420658 (if available)

No data available for Orthologs for LOC100420658 Gene

Paralogs for LOC100420658 Gene

No data available for Paralogs for LOC100420658 Gene

Variants for LOC100420658 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420658 Gene

Disorders for LOC100420658 Gene

No disorders were found for LOC100420658 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420658 Gene

Publications for LOC100420658 Gene

No publications were found for LOC100420658 Gene.

No data available for Mastermind for LOC100420658 Gene

Products for LOC100420658 Gene

Sources for LOC100420658 Gene