Aliases for LOC100420587 Gene

Aliases for LOC100420587 Gene

  • SHC Binding And Spindle Associated 1 Pseudogene 3

External Ids for LOC100420587 Gene

Previous GeneCards Identifiers for LOC100420587 Gene

  • GC19U901390
  • GC19M028927
  • GC19M029173

Summaries for LOC100420587 Gene

GeneCards Summary for LOC100420587 Gene

LOC100420587 (SHC Binding And Spindle Associated 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420587 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100420587 Gene

Genomics for LOC100420587 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around LOC100420587 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100420587 Gene

Genomic Locations for LOC100420587 Gene
chr19:28,435,388-28,727,694
(GRCh38/hg38)
Size:
292,307 bases
Orientation:
Minus strand
chr19:28,926,295-29,218,684
(GRCh37/hg19)
Size:
292,390 bases
Orientation:
Minus strand

Genomic View for LOC100420587 Gene

Genes around LOC100420587 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420587 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420587 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420587 Gene

Proteins for LOC100420587 Gene

Post-translational modifications for LOC100420587 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420587 Gene

Domains & Families for LOC100420587 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100420587 Gene

Function for LOC100420587 Gene

Phenotypes From GWAS Catalog for LOC100420587 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420587 Gene

Localization for LOC100420587 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420587 Gene

Pathways & Interactions for LOC100420587 Gene

PathCards logo

SuperPathways for LOC100420587 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100420587 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100420587 Gene

Drugs & Compounds for LOC100420587 Gene

No Compound Related Data Available

Transcripts for LOC100420587 Gene

mRNA/cDNA for LOC100420587 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420587 Gene

No ASD Table

Relevant External Links for LOC100420587 Gene

GeneLoc Exon Structure for
LOC100420587

Expression for LOC100420587 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100420587 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100420587 Gene

This gene is overexpressed in Pancreas (x16.7), Brain - Nucleus accumbens (basal ganglia) (x7.0), Brain - Putamen (basal ganglia) (x5.4), Testis (x4.8), and Brain - Caudate (basal ganglia) (x4.1).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100420587

genes like me logo Genes that share expression patterns with LOC100420587: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420587 Gene

Orthologs for LOC100420587 Gene

No data available for Orthologs and Evolution for LOC100420587 Gene

Paralogs for LOC100420587 Gene

No data available for Paralogs for LOC100420587 Gene

Variants for LOC100420587 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100420587 Gene

Variant ID Type Subtype PubMed ID
dgv1759n106 CNV deletion 24896259
esv2548006 CNV deletion 19546169
esv2663990 CNV deletion 23128226
esv2664647 CNV deletion 23128226
esv2718391 CNV deletion 23290073
esv2718395 CNV deletion 23290073
esv2718397 CNV deletion 23290073
esv2718398 CNV deletion 23290073
esv2718399 CNV deletion 23290073
esv3556251 CNV deletion 23714750
esv3583332 CNV loss 25503493
esv3644103 CNV loss 21293372
esv3644104 CNV loss 21293372
esv3644105 CNV loss 21293372
esv3644107 CNV loss 21293372
nsv1058756 CNV gain 25217958
nsv1059473 CNV gain 25217958
nsv1061604 CNV loss 25217958
nsv1116319 CNV deletion 24896259
nsv1121552 CNV deletion 24896259
nsv1127669 CNV deletion 24896259
nsv1134783 CNV deletion 24896259
nsv1149499 CNV deletion 26484159
nsv2449 CNV deletion 18451855
nsv579196 CNV gain 21841781
nsv579239 CNV loss 21841781
nsv833796 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC100420587 Gene

Disorders for LOC100420587 Gene

No disorders were found for LOC100420587 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420587 Gene

Publications for LOC100420587 Gene

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3
  2. Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche. (PMID: 23593202) Ran S … Deng HW (PloS one 2013) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100420587 Gene

Products for LOC100420587 Gene

Sources for LOC100420587 Gene