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Aliases for LOC100420587 Gene
Summaries for LOC100420587 Gene
GeneCards Summary for LOC100420587 Gene
LOC100420587 (SHC Binding And Spindle Associated 1 Pseudogene) is a Pseudogene.
Additional gene information for LOC100420587 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100420587 Gene
Genomics for LOC100420587 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100420587 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100420587 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC100420587 Gene
Genomic Locations for LOC100420587 Gene
- chr19:28,435,388-28,727,694
- (GRCh38/hg38)
- Size:
- 292,307 bases
- Orientation:
- Minus strand
- chr19:28,926,295-29,218,684
- (GRCh37/hg19)
- Size:
- 292,390 bases
- Orientation:
- Minus strand
Genomic View for LOC100420587 Gene
Genes around LOC100420587 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 19q12 by Entrez Gene
LOC100420587 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100420587 Gene
Proteins for LOC100420587 Gene
Post-translational modifications for LOC100420587 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100420587
- Origene Custom Protein Services for LOC100420587
No data available for DME Specific Peptides for LOC100420587 Gene
Domains & Families for LOC100420587 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100420587 Gene
Function for LOC100420587 Gene
Phenotypes From GWAS Catalog for LOC100420587 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420587 Gene
Localization for LOC100420587 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420587 Gene
Transcripts for LOC100420587 Gene
mRNA/cDNA for LOC100420587 Gene
- 3 NCBI additional mRNA sequence :
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LOC100420587 Gene
- GeneLoc Exon Structure for
- LOC100420587
Expression for LOC100420587 Gene
mRNA differential expression in normal tissues according to GTEx for LOC100420587 Gene
This gene is overexpressed in Pancreas (x16.7), Brain - Nucleus accumbens (basal ganglia) (x7.0), Brain - Putamen (basal ganglia) (x5.4), Testis (x4.8), and Brain - Caudate (basal ganglia) (x4.1).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100420587
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420587 Gene
Orthologs for LOC100420587 Gene
No data available for Orthologs and Evolution for LOC100420587 Gene
Paralogs for LOC100420587 Gene
No data available for Paralogs for LOC100420587 Gene
Variants for LOC100420587 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1759n106 | CNV | deletion | 24896259 |
| esv2548006 | CNV | deletion | 19546169 |
| esv2663990 | CNV | deletion | 23128226 |
| esv2664647 | CNV | deletion | 23128226 |
| esv2718391 | CNV | deletion | 23290073 |
| esv2718395 | CNV | deletion | 23290073 |
| esv2718397 | CNV | deletion | 23290073 |
| esv2718398 | CNV | deletion | 23290073 |
| esv2718399 | CNV | deletion | 23290073 |
| esv3556251 | CNV | deletion | 23714750 |
| esv3583332 | CNV | loss | 25503493 |
| esv3644103 | CNV | loss | 21293372 |
| esv3644104 | CNV | loss | 21293372 |
| esv3644105 | CNV | loss | 21293372 |
| esv3644107 | CNV | loss | 21293372 |
| nsv1058756 | CNV | gain | 25217958 |
| nsv1059473 | CNV | gain | 25217958 |
| nsv1061604 | CNV | loss | 25217958 |
| nsv1116319 | CNV | deletion | 24896259 |
| nsv1121552 | CNV | deletion | 24896259 |
| nsv1127669 | CNV | deletion | 24896259 |
| nsv1134783 | CNV | deletion | 24896259 |
| nsv1149499 | CNV | deletion | 26484159 |
| nsv2449 | CNV | deletion | 18451855 |
| nsv579196 | CNV | gain | 21841781 |
| nsv579239 | CNV | loss | 21841781 |
| nsv833796 | CNV | gain | 17160897 |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC100420587 Gene
Disorders for LOC100420587 Gene
No disorders were found for LOC100420587 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420587 Gene
Publications for LOC100420587 Gene
- Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3
- Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche. (PMID: 23593202) Ran S … Deng HW (PloS one 2013) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
No data available for Mastermind for LOC100420587 Gene
Products for LOC100420587 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100420587
- Origene Custom Protein Services for LOC100420587
- Browse OriGene Inhibitory RNA Products For LOC100420587
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100420587
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100420587
- Browse Sino Biological cDNA Clones
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
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- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100420587
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100420587
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100420587
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100420587
Sources for LOC100420587 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB