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Aliases for LOC100420571 Gene

Aliases for LOC100420571 Gene

  • RAB1A, Member RAS Oncogene Family Pseudogene 3
  • AC067945.1 5

External Ids for LOC100420571 Gene

Previous GeneCards Identifiers for LOC100420571 Gene

  • GC02U902187
  • GC02M191859
  • GC02M191860

Summaries for LOC100420571 Gene

GeneCards Summary for LOC100420571 Gene

LOC100420571 (RAB1A, Member RAS Oncogene Family Pseudogene) is a Pseudogene.

Additional gene information for LOC100420571 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100420571 Gene

Genomics for LOC100420571 Gene

GeneHancer (GH) Regulatory Elements for LOC100420571 Gene

Promoters and enhancers for LOC100420571 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I190993 Enhancer 0.3 dbSUPER 550.8 -0.4 -412 1.9 MAFK LOC100420571 ENSG00000230686 LOC105373805 STAT1 GLS GC02P191016
GH02I191011 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -20.1 -20132 4.6 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ZFP64 ARID4B NEUROD1 SIN3A STAT1 LOC105373805 MSTN NAB1 GLS HIBCH STAT4 GC02P191016 LOC100420571
GH02I190997 Enhancer 0.7 ENCODE dbSUPER 0.8 -2.8 -2843 0.2 CTCF POLR2A ZNF143 SMC3 ZNF444 RAD21 STAT1 ENSG00000230686 LOC105373805 LOC100420571 GC02P191016
GH02I190996 Enhancer 0.6 FANTOM5 dbSUPER 0.8 -3.3 -3303 0.2 CTCF POLR2A IKZF2 STAT1 LOC105373805 ENSG00000230686 LOC100420571 GC02P191016
GH02I190979 Enhancer 1.1 ENCODE dbSUPER 0.4 +12.8 12792 2.5 NEUROD1 SIN3A FEZF1 ZBTB7B GLIS2 FOS TSHZ1 REST SREBF1 GLIS1 GLS ENSG00000230686 LOC105373805 STAT1 LOC100420571 GC02P190930
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100420571 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100420571 Gene

Genomic Locations for LOC100420571 Gene
chr2:190,992,639-190,993,567
(GRCh38/hg38)
Size:
929 bases
Orientation:
Minus strand
chr2:191,857,365-191,858,293
(GRCh37/hg19)

Genomic View for LOC100420571 Gene

Genes around LOC100420571 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420571 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420571 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420571 Gene

Proteins for LOC100420571 Gene

Post-translational modifications for LOC100420571 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420571 Gene

Domains & Families for LOC100420571 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100420571 Gene

Function for LOC100420571 Gene

Phenotypes From GWAS Catalog for LOC100420571 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420571 Gene

Localization for LOC100420571 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420571 Gene

Pathways & Interactions for LOC100420571 Gene

SuperPathways for LOC100420571 Gene

No Data Available

Interacting Proteins for LOC100420571 Gene

Gene Ontology (GO) - Biological Process for LOC100420571 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100420571 Gene

Drugs & Compounds for LOC100420571 Gene

No Compound Related Data Available

Transcripts for LOC100420571 Gene

mRNA/cDNA for LOC100420571 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420571 Gene

No ASD Table

Relevant External Links for LOC100420571 Gene

GeneLoc Exon Structure for
LOC100420571

Expression for LOC100420571 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100420571 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100420571 Gene

This gene is overexpressed in Whole Blood (x6.3).
genes like me logo Genes that share expression patterns with LOC100420571: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420571 Gene

Orthologs for LOC100420571 Gene

Evolution for LOC100420571 Gene

ENSEMBL:
Gene Tree for LOC100420571 (if available)
TreeFam:
Gene Tree for LOC100420571 (if available)

No data available for Orthologs for LOC100420571 Gene

Paralogs for LOC100420571 Gene

No data available for Paralogs for LOC100420571 Gene

Variants for LOC100420571 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420571 Gene

Disorders for LOC100420571 Gene

Additional Disease Information for LOC100420571

No disorders were found for LOC100420571 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100420571 Gene

Publications for LOC100420571 Gene

No publications were found for LOC100420571 Gene.

Products for LOC100420571 Gene

Sources for LOC100420571 Gene

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