Aliases for LOC100420489 Gene

Aliases for LOC100420489 Gene

  • Tripartite Motif Containing 13 Pseudogene 3

External Ids for LOC100420489 Gene

Previous GeneCards Identifiers for LOC100420489 Gene

  • GC16U901200
  • GC16P071868
  • GC16P071833

Summaries for LOC100420489 Gene

GeneCards Summary for LOC100420489 Gene

LOC100420489 (Tripartite Motif Containing 13 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420489 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100420489 Gene

Genomics for LOC100420489 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100420489 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J071841 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 +8.8 8785 2.6 SP1 STAT3 RELA IKZF2 YY1 PKNOX1 EED ARID3A PAX8 RFX1 PHLPP2 MARVELD3 IST1 ZNF23 ZNF821 DHX38 ATXN1L lnc-ZNF821-5 LOC100420489 AP1G1
GH16J071840 Enhancer 0.4 Ensembl 0.4 +6.1 6084 0.4 GATA3 JUND FOS PHLPP2 ATXN1L LOC100420489 lnc-ZNF821-5 AP1G1 L13705-005
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100420489 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100420489 Gene

Genomic Locations for LOC100420489 Gene
chr16:71,834,316-71,835,938
(GRCh38/hg38)
Size:
1,623 bases
Orientation:
Plus strand
chr16:71,867,690-71,869,847
(GRCh37/hg19)
Size:
2,158 bases
Orientation:
Plus strand

Genomic View for LOC100420489 Gene

Genes around LOC100420489 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420489 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420489 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420489 Gene

Proteins for LOC100420489 Gene

Post-translational modifications for LOC100420489 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420489 Gene

Domains & Families for LOC100420489 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100420489 Gene

Function for LOC100420489 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420489 Gene

Localization for LOC100420489 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420489 Gene

Pathways & Interactions for LOC100420489 Gene

PathCards logo

SuperPathways for LOC100420489 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100420489 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100420489 Gene

Drugs & Compounds for LOC100420489 Gene

No Compound Related Data Available

Transcripts for LOC100420489 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420489 Gene

No ASD Table

Relevant External Links for LOC100420489 Gene

GeneLoc Exon Structure for
LOC100420489

No data available for mRNA/cDNA for LOC100420489 Gene

Expression for LOC100420489 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100420489 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100420489 Gene

This gene is overexpressed in Pituitary (x4.6).
genes like me logo Genes that share expression patterns with LOC100420489: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420489 Gene

Orthologs for LOC100420489 Gene

No data available for Orthologs and Evolution for LOC100420489 Gene

Paralogs for LOC100420489 Gene

No data available for Paralogs for LOC100420489 Gene

Variants for LOC100420489 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420489 Gene

Disorders for LOC100420489 Gene

No disorders were found for LOC100420489 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420489 Gene

Publications for LOC100420489 Gene

No publications were found for LOC100420489 Gene.

No data available for Mastermind for LOC100420489 Gene

Products for LOC100420489 Gene

Sources for LOC100420489 Gene