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Aliases for LOC100420435 Gene

Aliases for LOC100420435 Gene

  • Ubiquitin Specific Peptidase 21 Pseudogene 3
  • AC019109.1 5

External Ids for LOC100420435 Gene

Previous GeneCards Identifiers for LOC100420435 Gene

  • GC02U902111
  • GC02P225035

Summaries for LOC100420435 Gene

GeneCards Summary for LOC100420435 Gene

LOC100420435 (Ubiquitin Specific Peptidase 21 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420435 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100420435 Gene

Genomics for LOC100420435 Gene

GeneHancer (GH) Regulatory Elements for LOC100420435 Gene

Promoters and enhancers for LOC100420435 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I224150 Enhancer 0.8 ENCODE 6.3 -18.2 -18247 1 FOXA2 RAD21 RARA FOS CREM HMG20B USF2 NFYC CEBPB ELF1 LOC100420435 GC02M224071 PIR36342
GH02I224145 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.9 -22910 2.6 FOXA2 MLX ARID4B ETS1 SLC30A9 FOS SP5 MIER2 REST PPARG LOC100420435 GC02M224071 PIR36342
GH02I224141 Enhancer 0.8 Ensembl ENCODE 0.3 -27.0 -26988 1.4 JUND JUN CEBPB FOSL2 FOS EP300 TCF7L2 ZBTB17 LOC100420435 GC02M224071 PIR36342
GH02I224101 Enhancer 1.1 Ensembl ENCODE 0.2 -66.2 -66156 4.4 ELF3 FOXA2 MLX ARID4B RAD21 THRB RARA ATF7 FOS CREM GC02M224071 PIR36342 LOC100420435
GH02I224195 Enhancer 0.6 ENCODE 0.3 +26.4 26412 1.9 FOXA2 JUN CEBPB EP300 ZNF623 NR2F2 JUND NR2C1 FOS NR2F6 GC02M224189 LOC100420435
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100420435 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100420435 Gene

Genomic Locations for LOC100420435 Gene
chr2:224,169,664-224,171,538
(GRCh38/hg38)
Size:
1,875 bases
Orientation:
Plus strand
chr2:225,034,381-225,036,255
(GRCh37/hg19)

Genomic View for LOC100420435 Gene

Genes around LOC100420435 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420435 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420435 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420435 Gene

Proteins for LOC100420435 Gene

Post-translational modifications for LOC100420435 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420435 Gene

Domains & Families for LOC100420435 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100420435 Gene

Function for LOC100420435 Gene

Phenotypes From GWAS Catalog for LOC100420435 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420435 Gene

Localization for LOC100420435 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420435 Gene

Pathways & Interactions for LOC100420435 Gene

SuperPathways for LOC100420435 Gene

No Data Available

Interacting Proteins for LOC100420435 Gene

Gene Ontology (GO) - Biological Process for LOC100420435 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100420435 Gene

Drugs & Compounds for LOC100420435 Gene

No Compound Related Data Available

Transcripts for LOC100420435 Gene

mRNA/cDNA for LOC100420435 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420435 Gene

No ASD Table

Relevant External Links for LOC100420435 Gene

GeneLoc Exon Structure for
LOC100420435

Expression for LOC100420435 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100420435 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100420435 Gene

This gene is overexpressed in Testis (x37.7) and Small Intestine - Terminal Ileum (x7.5).
genes like me logo Genes that share expression patterns with LOC100420435: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420435 Gene

Orthologs for LOC100420435 Gene

Evolution for LOC100420435 Gene

ENSEMBL:
Gene Tree for LOC100420435 (if available)
TreeFam:
Gene Tree for LOC100420435 (if available)

No data available for Orthologs for LOC100420435 Gene

Paralogs for LOC100420435 Gene

No data available for Paralogs for LOC100420435 Gene

Variants for LOC100420435 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420435 Gene

Disorders for LOC100420435 Gene

No disorders were found for LOC100420435 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420435 Gene

Publications for LOC100420435 Gene

No publications were found for LOC100420435 Gene.

Products for LOC100420435 Gene

Sources for LOC100420435 Gene

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