Aliases for LOC100420170 Gene

Aliases for LOC100420170 Gene

  • Ribosomal Protein L7 Like 1 Pseudogene 3

External Ids for LOC100420170 Gene

Previous GeneCards Identifiers for LOC100420170 Gene

  • GC01U902907
  • GC01P109052

Summaries for LOC100420170 Gene

GeneCards Summary for LOC100420170 Gene

LOC100420170 (Ribosomal Protein L7 Like 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420170 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100420170 Gene

Genomics for LOC100420170 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100420170 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J108507 Enhancer 0.3 Ensembl 250.7 -0.8 -773 1.6 ZNF664 ATF2 ENSG00000226483 LOC100420170 lnc-NBPF6-7 FAM102B PRPF38B SLC25A24 HSALNG0005810 NBPF6
GH01J108504 Enhancer 0.9 Ensembl 0.7 -3.1 -3072 2.6 MNT IKZF1 HES1 BHLHE40 MCM7 MCM3 ARNT GABPA NFATC3 NBN SLC25A24 PRPF38B ENSG00000228665 FAM102B RPL17P7 HSALNG0005810 LOC100420170 lnc-NBPF6-7 NBPF6
GH01J108501 Enhancer 0.8 Ensembl ENCODE 0.4 -5.6 -5598 2 BRCA1 CEBPB EP300 RXRA RAD21 RFX5 TEAD3 STAT3 TBP ZNF316 ENSG00000283354 HSALNG0005810 ST13P21 FAM102B SLC25A24 PRPF38B LOC100420170 lnc-NBPF6-7 NBPF6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100420170 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100420170 Gene

Latest Assembly
chr1:108,508,573-108,509,398
(GRCh38/hg38)
Size:
826 bases
Orientation:
Plus strand

Previous Assembly
chr1:109,051,195-109,052,020
(GRCh37/hg19 by Entrez Gene)
Size:
826 bases
Orientation:
Plus strand

Genomic View for LOC100420170 Gene

Genes around LOC100420170 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420170 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420170 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420170 Gene

Proteins for LOC100420170 Gene

Post-translational modifications for LOC100420170 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420170 Gene

Domains & Families for LOC100420170 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100420170 Gene

Function for LOC100420170 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420170 Gene

Localization for LOC100420170 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420170 Gene

Pathways & Interactions for LOC100420170 Gene

PathCards logo

SuperPathways for LOC100420170 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100420170 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100420170 Gene

Drugs & Compounds for LOC100420170 Gene

No Compound Related Data Available

Transcripts for LOC100420170 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420170 Gene

No ASD Table

Relevant External Links for LOC100420170 Gene

GeneLoc Exon Structure for
LOC100420170

No data available for mRNA/cDNA for LOC100420170 Gene

Expression for LOC100420170 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100420170 Gene

genes like me logo Genes that share expression patterns with LOC100420170: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420170 Gene

Orthologs for LOC100420170 Gene

No data available for Orthologs and Evolution for LOC100420170 Gene

Paralogs for LOC100420170 Gene

No data available for Paralogs for LOC100420170 Gene

Variants for LOC100420170 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420170 Gene

Disorders for LOC100420170 Gene

No disorders were found for LOC100420170 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420170 Gene

Publications for LOC100420170 Gene

No publications were found for LOC100420170 Gene.

No data available for Mastermind for LOC100420170 Gene

Products for LOC100420170 Gene

Sources for LOC100420170 Gene