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Aliases for LOC100420110 Gene

Aliases for LOC100420110 Gene

  • SCY1 Like Pseudokinase 2 Pseudogene 3
  • AC007256.1 5

External Ids for LOC100420110 Gene

Previous GeneCards Identifiers for LOC100420110 Gene

  • GC02U902131
  • GC02M202276

Summaries for LOC100420110 Gene

GeneCards Summary for LOC100420110 Gene

LOC100420110 (SCY1 Like Pseudokinase 2 Pseudogene) is a Pseudogene.

Additional gene information for LOC100420110 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100420110 Gene

Genomics for LOC100420110 Gene

GeneHancer (GH) Regulatory Elements for LOC100420110 Gene

Promoters and enhancers for LOC100420110 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I201410 Enhancer 0.9 Ensembl ENCODE 550.8 +0.3 340 4.7 L3MBTL2 ZBED1 JUNB MNT ZNF398 ATF2 MEF2D ZNF335 GATA3 NCOR1 LOC100420110 CASP8 STRADB TRAK2
GH02I202264 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 23.4 -853.0 -852969 3.9 HDGF HNRNPUL1 PKNOX1 SMAD1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 NOP58 LOC100420110 RPL12P16 CYP20A1 NBEAL1 ENSG00000273456 FAM117B PIR47513 GC02P202236
GH02I200887 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 23.5 +524.1 524149 3.6 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 ZNF610 GLIS1 PPIL3 NIF3L1 ORC2 TYW5 LOC100420110 CLK1 CASP10 RNU6-312P
GH02I200962 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 13 +449.5 449531 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ORC2 LOC105373835 PPIL3 CDK15 LOC100420110 KCTD18 SGO2 CLK1 CASP8 FAM126B
GH02I202030 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 -621.9 -621857 9.8 CLOCK ATF1 ZNF133 SIN3A ZNF2 ZNF48 YY1 ETS1 GLIS2 ZNF213 FZD7 ENSG00000273209 NOP58 CDK15 KIAA2012 CARF LOC100420110 LOC729224 RNU6-440P FAM117B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100420110 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100420110 Gene

Genomic Locations for LOC100420110 Gene
chr2:201,410,320-201,413,337
(GRCh38/hg38)
Size:
3,018 bases
Orientation:
Minus strand
chr2:202,275,072-202,278,060
(GRCh37/hg19)

Genomic View for LOC100420110 Gene

Genes around LOC100420110 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420110 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420110 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100420110 Gene

Proteins for LOC100420110 Gene

Post-translational modifications for LOC100420110 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420110 Gene

Domains & Families for LOC100420110 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100420110 Gene

Function for LOC100420110 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420110 Gene

Localization for LOC100420110 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420110 Gene

Pathways & Interactions for LOC100420110 Gene

SuperPathways for LOC100420110 Gene

No Data Available

Interacting Proteins for LOC100420110 Gene

Gene Ontology (GO) - Biological Process for LOC100420110 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100420110 Gene

Drugs & Compounds for LOC100420110 Gene

No Compound Related Data Available

Transcripts for LOC100420110 Gene

mRNA/cDNA for LOC100420110 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420110 Gene

No ASD Table

Relevant External Links for LOC100420110 Gene

GeneLoc Exon Structure for
LOC100420110

Expression for LOC100420110 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100420110 Gene

genes like me logo Genes that share expression patterns with LOC100420110: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420110 Gene

Orthologs for LOC100420110 Gene

Evolution for LOC100420110 Gene

ENSEMBL:
Gene Tree for LOC100420110 (if available)
TreeFam:
Gene Tree for LOC100420110 (if available)

No data available for Orthologs for LOC100420110 Gene

Paralogs for LOC100420110 Gene

No data available for Paralogs for LOC100420110 Gene

Variants for LOC100420110 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420110 Gene

Disorders for LOC100420110 Gene

No disorders were found for LOC100420110 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420110 Gene

Publications for LOC100420110 Gene

No publications were found for LOC100420110 Gene.

Products for LOC100420110 Gene

Sources for LOC100420110 Gene

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