LOC100420103 Gene (Pseudogene)

Uncharacterized LOC100420103

GC22M019646
GIFtS:
1
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Aliases for LOC100420103 Gene

Aliases for LOC100420103 Gene

  • Uncharacterized LOC100420103 3

External Ids for LOC100420103 Gene

Previous GeneCards Identifiers for LOC100420103 Gene

  • GC22U900689
  • GC22M003267

Summaries for LOC100420103 Gene

GeneCards Summary for LOC100420103 Gene

LOC100420103 (Uncharacterized LOC100420103) is a Pseudogene.

Additional gene information for LOC100420103 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100420103 Gene

Genomics for LOC100420103 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100420103 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH22J019660 Enhancer 0.5 Ensembl 600.7 -1.6 -1587 0.4 RNF2 ARHGAP35 ZNF512 MTA1 MCM3 MCM5 MCM7 SMARCA5 LOC100420103 RPL7AP70 DGCR11 SEPTIN5 GP1BB MED15 SCARF2 UFD1 ENSG00000225007 lnc-SEPT5-4
GH22J019662 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 -5.4 -5387 5.2 RNF2 PRDM10 ZIC2 PATZ1 ZNF341 SP2 MTA3 EGR1 ZNF10 CEBPB ENSG00000225007 RPL7AP70 DGCR11 SEPTIN5 GP1BB MED15 SCARF2 UFD1 LOC100420103 CLDN5
GH22J019654 Enhancer 0.5 Ensembl 0.4 +5.0 5013 0.8 CEBPB ZNF507 NANOG ZNF354B POU5F1 lnc-SEPT5-4 DGCR8 E2F6P1 LINC01311 SEPTIN5 GP1BB CLDN5 TRMT2A ENSG00000215493 ZDHHC8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100420103 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100420103 Gene

Genomic Locations for LOC100420103 Gene
chr22:19,659,258-19,659,814
(GRCh38/hg38)
Size:
557 bases
Orientation:
Minus strand
chr22:19,646,781-19,647,337
(GRCh37/hg19)
Size:
557 bases
Orientation:
Minus strand

Genomic View for LOC100420103 Gene

Genes around LOC100420103 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100420103 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100420103 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100420103 Gene

Proteins for LOC100420103 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100420103 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100420103 Gene

Domains & Families for LOC100420103 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100420103 Gene

Function for LOC100420103 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100420103 Gene

Localization for LOC100420103 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100420103 Gene

Pathways & Interactions for LOC100420103 Gene

PathCards logo

SuperPathways for LOC100420103 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100420103 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100420103 Gene

Drugs & Compounds for LOC100420103 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100420103 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100420103 Gene

No ASD Table

Relevant External Links for LOC100420103 Gene

GeneLoc Exon Structure for
LOC100420103

No data available for mRNA/cDNA for LOC100420103 Gene

Expression for LOC100420103 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100420103 Gene

Orthologs for LOC100420103 Gene

No data available for Orthologs and Evolution for LOC100420103 Gene

Paralogs for LOC100420103 Gene

No data available for Paralogs for LOC100420103 Gene

Variants for LOC100420103 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100420103 Gene

Disorders for LOC100420103 Gene

No disorders were found for LOC100420103 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100420103 Gene

Publications for LOC100420103 Gene

No publications were found for LOC100420103 Gene.

No data available for Mastermind for LOC100420103 Gene

Products for LOC100420103 Gene

Sources for LOC100420103 Gene