Aliases for LOC100419920 Gene

Aliases for LOC100419920 Gene

  • Ankyrin Repeat Domain 33B Pseudogene 3

External Ids for LOC100419920 Gene

Previous GeneCards Identifiers for LOC100419920 Gene

  • GC02U902101
  • GC02P096192

Summaries for LOC100419920 Gene

GeneCards Summary for LOC100419920 Gene

LOC100419920 (Ankyrin Repeat Domain 33B Pseudogene) is a Pseudogene.

Additional gene information for LOC100419920 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100419920 Gene

Genomics for LOC100419920 Gene

GeneHancer (GH) Regulatory Elements for LOC100419920 Gene

Promoters and enhancers for LOC100419920 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J095525 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 750.6 +1.6 1555 3.4 POLR2A ETV6 MNT NKRF SP1 MLLT1 ZNF687 IKZF1 BACH1 RFX1 ENSG00000229689 ENSG00000272913 LOC100419920 lnc-TRIM43-1 ENSG00000235584 ENSG00000236431 lnc-TRIM43B-2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100419920 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100419920 Gene

Genomic Locations for LOC100419920 Gene
chr2:95,525,346-95,527,220
(GRCh38/hg38)
Size:
1,875 bases
Orientation:
Plus strand
chr2:96,191,093-96,198,153
(GRCh37/hg19)
Size:
7,061 bases
Orientation:
Plus strand

Genomic View for LOC100419920 Gene

Genes around LOC100419920 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100419920 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100419920 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100419920 Gene

Proteins for LOC100419920 Gene

Post-translational modifications for LOC100419920 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100419920 Gene

Domains & Families for LOC100419920 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100419920 Gene

Function for LOC100419920 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100419920 Gene

Localization for LOC100419920 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100419920 Gene

Pathways & Interactions for LOC100419920 Gene

PathCards logo

SuperPathways for LOC100419920 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100419920 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100419920 Gene

Drugs & Compounds for LOC100419920 Gene

No Compound Related Data Available

Transcripts for LOC100419920 Gene

mRNA/cDNA for LOC100419920 Gene

(2) Additional mRNA sequences :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100419920 Gene

No ASD Table

Relevant External Links for LOC100419920 Gene

GeneLoc Exon Structure for
LOC100419920

Expression for LOC100419920 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100419920 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100419920 Gene

This gene is overexpressed in Thyroid (x6.1) and Brain - Cerebellum (x4.4).
genes like me logo Genes that share expression patterns with LOC100419920: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100419920 Gene

Orthologs for LOC100419920 Gene

No data available for Orthologs and Evolution for LOC100419920 Gene

Paralogs for LOC100419920 Gene

No data available for Paralogs for LOC100419920 Gene

Variants for LOC100419920 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100419920 Gene

Disorders for LOC100419920 Gene

No disorders were found for LOC100419920 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100419920 Gene

Publications for LOC100419920 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 56
  2. Identification of genes from a schizophrenia-linked translocation breakpoint region. (PMID: 11352574) Semple CA … Porteous DJ (Genomics 2001) 3 56

No data available for External Links for LOC100419920 Gene

Products for LOC100419920 Gene

Sources for LOC100419920 Gene