Aliases for LOC100419700 Gene

Aliases for LOC100419700 Gene

  • MIA SH3 Domain ER Export Factor 2 Pseudogene 3
  • CTAGE Family Member 5, ER Export Factor Pseudogene 3
  • CTAGE Family, Member 5 (CTAGE5) Pseudogene 5
  • Melanoma Inhibitory Activity 2 Pseudogene 3
  • CTAGE Family Member 5 Pseudogene 3
  • AC079866.1 5

External Ids for LOC100419700 Gene

Previous GeneCards Identifiers for LOC100419700 Gene

  • GC12U901435
  • GC12M064281

Summaries for LOC100419700 Gene

GeneCards Summary for LOC100419700 Gene

LOC100419700 (MIA SH3 Domain ER Export Factor 2 Pseudogene) is a Pseudogene.

Additional gene information for LOC100419700 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100419700 Gene

Genomics for LOC100419700 Gene

GeneHancer (GH) Regulatory Elements for LOC100419700 Gene

Promoters and enhancers for LOC100419700 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J063888 Enhancer 0.9 Ensembl ENCODE 500.7 -1.0 -1009 2 TCF12 JUND FOS TEAD1 KDM1A FOXA2 FOSL2 NR3C1 SIN3A SMAD4 LOC100419700 lnc-DPY19L2-7 ENSG00000255629 RNU6-1009P lnc-RXYLT1-2 SRGAP1
GH12J063882 Enhancer 0.8 Ensembl ENCODE 0.4 +5.7 5681 1 USF1 ZIC2 MXI1 ZBTB17 POLR2A IKZF3 RCOR1 GLIS1 SMARCA4 PRDM4 DPY19L2 ENSG00000256571 LOC100419700 lnc-DPY19L2-7 SRGAP1
GH12J063885 Enhancer 0.4 Ensembl ENCODE 0.7 +3.1 3059 0.8 ZNF680 LOC100419700 lnc-DPY19L2-7 ENSG00000256571 SRGAP1
GH12J063891 Enhancer 0.3 Ensembl 0.7 -2.7 -2703 0.6 NR3C1 lnc-RXYLT1-2 ENSG00000255629 RNU6-1009P LOC100419700 lnc-DPY19L2-7 SRGAP1
GH12J063884 Enhancer 0.3 Ensembl 0.7 +4.2 4197 0.8 ATF3 ENSG00000258117 LOC100419700 lnc-DPY19L2-7 ENSG00000256571 SRGAP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100419700 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100419700 Gene

Genomic Locations for LOC100419700 Gene
chr12:63,887,379-63,888,598
(GRCh38/hg38)
Size:
1,220 bases
Orientation:
Minus strand
chr12:64,281,159-64,282,378
(GRCh37/hg19)
Size:
1,220 bases
Orientation:
Minus strand

Genomic View for LOC100419700 Gene

Genes around LOC100419700 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100419700 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100419700 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100419700 Gene

Proteins for LOC100419700 Gene

Post-translational modifications for LOC100419700 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100419700 Gene

Domains & Families for LOC100419700 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100419700 Gene

Function for LOC100419700 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100419700 Gene

Localization for LOC100419700 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100419700 Gene

Pathways & Interactions for LOC100419700 Gene

PathCards logo

SuperPathways for LOC100419700 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100419700 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100419700 Gene

Drugs & Compounds for LOC100419700 Gene

No Compound Related Data Available

Transcripts for LOC100419700 Gene

mRNA/cDNA for LOC100419700 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100419700 Gene

No ASD Table

Relevant External Links for LOC100419700 Gene

GeneLoc Exon Structure for
LOC100419700

Expression for LOC100419700 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100419700 Gene

genes like me logo Genes that share expression patterns with LOC100419700: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100419700 Gene

Orthologs for LOC100419700 Gene

Evolution for LOC100419700 Gene

ENSEMBL:
Gene Tree for LOC100419700 (if available)
TreeFam:
Gene Tree for LOC100419700 (if available)

No data available for Orthologs for LOC100419700 Gene

Paralogs for LOC100419700 Gene

No data available for Paralogs for LOC100419700 Gene

Variants for LOC100419700 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100419700 Gene

Disorders for LOC100419700 Gene

No disorders were found for LOC100419700 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100419700 Gene

Publications for LOC100419700 Gene

No publications were found for LOC100419700 Gene.

No data available for Mastermind for LOC100419700 Gene

Products for LOC100419700 Gene

Sources for LOC100419700 Gene