Aliases for LOC100419639 Gene

Aliases for LOC100419639 Gene

  • Ribosomal Protein L21 Pseudogene 3

External Ids for LOC100419639 Gene

Previous GeneCards Identifiers for LOC100419639 Gene

  • GC16U901226
  • GC16P082468
  • GC16P082436
  • GC16P082437
  • GC16P082438

Summaries for LOC100419639 Gene

GeneCards Summary for LOC100419639 Gene

LOC100419639 (Ribosomal Protein L21 Pseudogene) is a Pseudogene.

Additional gene information for LOC100419639 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100419639 Gene

Genomics for LOC100419639 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100419639 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J082405 Enhancer 0.5 Ensembl 0.3 -29.3 -29288 0.6 JUND CEBPG ATF2 ATF4 CEBPB ATF3 ZNF24 ATF7 LOC100419639 HSALNG0113042 CDH13 MPHOSPH6
GH16J082395 Enhancer 0.5 Ensembl 0.3 -37.3 -37289 3.8 FOXA2 JUND ATF2 CREB1 ATF7 ATF3 FOXA3 SP1 LOC100419639 HSALNG0113042 HSALNG0113041 CDH13 MPHOSPH6
GH16J082329 Enhancer 1 Ensembl ENCODE 0.1 -105.0 -104996 1.6 CEBPA ZNF217 SIX4 THAP11 MBD2 FOXA2 MAFF SMAD4 SAP130 RXRA HSALNG0113042 HSALNG0113041 LOC100419639 MPHOSPH6 CDH13
GH16J082358 Enhancer 0.7 Ensembl ENCODE 0.2 -75.9 -75863 0.7 ZNF217 CTBP1 SMARCE1 FOXA1 ZNF512B DPF2 CREB1 RCOR1 HSALNG0113042 LOC100419639 HSALNG0113041 MPHOSPH6 CDH13
GH16J082385 Enhancer 0.4 Ensembl 0.3 -49.5 -49488 0.2 RCOR1 GATA2 CHD2 LOC100419639 HSALNG0113042 HSALNG0113041 MPHOSPH6 CDH13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100419639 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100419639 Gene

Latest Assembly
chr16:82,434,789-82,435,413
(GRCh38/hg38)
Size:
625 bases
Orientation:
Plus strand

Previous Assembly
chr16:82,468,394-82,469,018
(GRCh37/hg19 by Entrez Gene)
Size:
625 bases
Orientation:
Plus strand

Genomic View for LOC100419639 Gene

Genes around LOC100419639 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100419639 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100419639 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100419639 Gene

Proteins for LOC100419639 Gene

Post-translational modifications for LOC100419639 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100419639 Gene

Domains & Families for LOC100419639 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100419639 Gene

Function for LOC100419639 Gene

Phenotypes From GWAS Catalog for LOC100419639 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100419639 Gene

Localization for LOC100419639 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100419639 Gene

Pathways & Interactions for LOC100419639 Gene

PathCards logo

SuperPathways for LOC100419639 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100419639 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100419639 Gene

Drugs & Compounds for LOC100419639 Gene

No Compound Related Data Available

Transcripts for LOC100419639 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100419639 Gene

No ASD Table

Relevant External Links for LOC100419639 Gene

GeneLoc Exon Structure for
LOC100419639

No data available for mRNA/cDNA for LOC100419639 Gene

Expression for LOC100419639 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100419639 Gene

genes like me logo Genes that share expression patterns with LOC100419639: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100419639 Gene

Orthologs for LOC100419639 Gene

No data available for Orthologs and Evolution for LOC100419639 Gene

Paralogs for LOC100419639 Gene

No data available for Paralogs for LOC100419639 Gene

Variants for LOC100419639 Gene

Additional Variant Information for LOC100419639 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LOC100419639

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LOC100419639 Gene

Disorders for LOC100419639 Gene

No disorders were found for LOC100419639 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100419639 Gene

Publications for LOC100419639 Gene

No publications were found for LOC100419639 Gene.

No data available for Mastermind for LOC100419639 Gene

Products for LOC100419639 Gene

Sources for LOC100419639 Gene