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Aliases for LOC100419565 Gene

Aliases for LOC100419565 Gene

  • Ribosomal Protein S3A Pseudogene 3
  • AL034418.1 5

External Ids for LOC100419565 Gene

Previous GeneCards Identifiers for LOC100419565 Gene

  • GC20U900594
  • GC20M046260

Summaries for LOC100419565 Gene

GeneCards Summary for LOC100419565 Gene

LOC100419565 (Ribosomal Protein S3A Pseudogene) is a Pseudogene.

Additional gene information for LOC100419565 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100419565 Gene

Genomics for LOC100419565 Gene

GeneHancer (GH) Regulatory Elements for LOC100419565 Gene

Promoters and enhancers for LOC100419565 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I047630 Enhancer 0.3 dbSUPER 550.8 +0.0 25 1.6 POLR2A LOC100419565 GC20P047622 NCOA3
GH20I047436 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 13.1 +192.1 192090 5.7 PKNOX1 FOXA2 RB1 SIN3A ETV6 BCLAF1 IKZF2 RUNX3 NFYC USF2 NCOA3 LOC100419565 TP53RK GC20P047451 GC20P047426
GH20I047765 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -134.9 -134893 1.4 HDGF NFIB SIN3A ZBTB7B RFX5 ELK1 HSF1 SCRT2 ZNF207 RCOR1 NCOA3 LOC100419565 SULF2 GC20M047707
GH20I047410 Enhancer 1.3 Ensembl ENCODE dbSUPER 12.2 +217.2 217185 7.9 HDGF PKNOX1 FOXA2 SMAD1 YBX1 IRF4 ZNF207 ZNF143 ATF7 RUNX3 LINC01754 NCOA3 ZNF334 LOC100419565 TP53RK ZNF663P LINC00494 GC20M047416
GH20I048002 Enhancer 1.4 FANTOM5 Ensembl ENCODE 11.2 -371.6 -371605 1.2 HDGF PKNOX1 SMAD1 NEUROD1 ZBTB7B IRF4 ETS1 ZNF207 ZNF143 ATF7 NCOA3 SULF2 LOC100419565 LOC100131496 LINC01522 LOC105372639
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100419565 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100419565 Gene

Genomic Locations for LOC100419565 Gene
chr20:47,630,266-47,631,438
(GRCh38/hg38)
Size:
1,173 bases
Orientation:
Minus strand
chr20:46,259,010-46,260,182
(GRCh37/hg19)

Genomic View for LOC100419565 Gene

Genes around LOC100419565 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100419565 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100419565 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100419565 Gene

Proteins for LOC100419565 Gene

Post-translational modifications for LOC100419565 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100419565 Gene

Domains & Families for LOC100419565 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100419565 Gene

Function for LOC100419565 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100419565 Gene

Localization for LOC100419565 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100419565 Gene

Pathways & Interactions for LOC100419565 Gene

SuperPathways for LOC100419565 Gene

No Data Available

Interacting Proteins for LOC100419565 Gene

Gene Ontology (GO) - Biological Process for LOC100419565 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100419565 Gene

Drugs & Compounds for LOC100419565 Gene

No Compound Related Data Available

Transcripts for LOC100419565 Gene

mRNA/cDNA for LOC100419565 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100419565 Gene

No ASD Table

Relevant External Links for LOC100419565 Gene

GeneLoc Exon Structure for
LOC100419565

Expression for LOC100419565 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100419565 Gene

genes like me logo Genes that share expression patterns with LOC100419565: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100419565 Gene

Orthologs for LOC100419565 Gene

Evolution for LOC100419565 Gene

ENSEMBL:
Gene Tree for LOC100419565 (if available)
TreeFam:
Gene Tree for LOC100419565 (if available)

No data available for Orthologs for LOC100419565 Gene

Paralogs for LOC100419565 Gene

No data available for Paralogs for LOC100419565 Gene

Variants for LOC100419565 Gene

Additional Variant Information for LOC100419565 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LOC100419565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LOC100419565 Gene

Disorders for LOC100419565 Gene

No disorders were found for LOC100419565 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100419565 Gene

Publications for LOC100419565 Gene

No publications were found for LOC100419565 Gene.

Products for LOC100419565 Gene

Sources for LOC100419565 Gene

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