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Aliases for LOC100419436 Gene

Aliases for LOC100419436 Gene

  • Ribosomal Protein S2 Pseudogene 3
  • AC087163.2 5

External Ids for LOC100419436 Gene

Previous GeneCards Identifiers for LOC100419436 Gene

  • GC17U901475
  • GC17P017914

Summaries for LOC100419436 Gene

GeneCards Summary for LOC100419436 Gene

LOC100419436 (Ribosomal Protein S2 Pseudogene) is a Pseudogene.

Additional gene information for LOC100419436 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100419436 Gene

Genomics for LOC100419436 Gene

GeneHancer (GH) Regulatory Elements for LOC100419436 Gene

Promoters and enhancers for LOC100419436 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I018008 Enhancer 0.5 ENCODE 562.9 -1.7 -1732 1.6 ZNF302 ZMYM3 RCOR1 REST CHD2 LOC100419436 TOM1L2 MPRIP ZNF286B PIR55924 ATPAF2 DRC3
GH17I018009 Enhancer 0.4 ENCODE 562.9 -0.8 -841 0.2 ZNF302 RCOR1 LOC100419436 TOM1L2 MPRIP ZNF286B PIR55924 ATPAF2 DRC3
GH17I018087 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 36 +77.6 77573 1.9 MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 DRG2 ENSG00000264885 ZNF286B RAI1 FOXO3B SMCR8 LOC100419436 FAM106A ENSG00000265511 SMCR5
GH17I018624 Promoter/Enhancer 1.5 Ensembl ENCODE 45 +614.7 614658 1.4 HDGF PKNOX1 SIN3A ZNF2 ZNF213 E2F8 ZNF207 ZNF143 KLF13 SP3 CCDC144B USP32P2 LOC100419436 ENSG00000264885 DRG2 ZNF286B RAI1 FOXO3B FAM106A ENSG00000273018
GH17I017493 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 22.5 -515.3 -515336 4.5 ATF1 SIN3A DMAP1 ZNF48 GLIS2 ZNF143 RUNX3 ZNF202 SP3 RXRA RASD1 LOC100419436 DRG2 LOC644422 ENSG00000265511 RAI1 TOP3A SMCR8 ACTG1P24 MPRIP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100419436 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100419436 Gene

Genomic Locations for LOC100419436 Gene
chr17:18,010,643-18,011,826
(GRCh38/hg38)
Size:
1,184 bases
Orientation:
Plus strand
chr17:17,913,957-17,915,140
(GRCh37/hg19)

Genomic View for LOC100419436 Gene

Genes around LOC100419436 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100419436 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100419436 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100419436 Gene

Proteins for LOC100419436 Gene

Post-translational modifications for LOC100419436 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100419436 Gene

Domains & Families for LOC100419436 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100419436 Gene

Function for LOC100419436 Gene

Phenotypes From GWAS Catalog for LOC100419436 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100419436 Gene

Localization for LOC100419436 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100419436 Gene

Pathways & Interactions for LOC100419436 Gene

SuperPathways for LOC100419436 Gene

No Data Available

Interacting Proteins for LOC100419436 Gene

Gene Ontology (GO) - Biological Process for LOC100419436 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100419436 Gene

Drugs & Compounds for LOC100419436 Gene

No Compound Related Data Available

Transcripts for LOC100419436 Gene

mRNA/cDNA for LOC100419436 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100419436 Gene

No ASD Table

Relevant External Links for LOC100419436 Gene

GeneLoc Exon Structure for
LOC100419436

Expression for LOC100419436 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100419436 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100419436 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x4.2).
genes like me logo Genes that share expression patterns with LOC100419436: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100419436 Gene

Orthologs for LOC100419436 Gene

Evolution for LOC100419436 Gene

ENSEMBL:
Gene Tree for LOC100419436 (if available)
TreeFam:
Gene Tree for LOC100419436 (if available)

No data available for Orthologs for LOC100419436 Gene

Paralogs for LOC100419436 Gene

No data available for Paralogs for LOC100419436 Gene

Variants for LOC100419436 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100419436 Gene

Disorders for LOC100419436 Gene

No disorders were found for LOC100419436 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100419436 Gene

Publications for LOC100419436 Gene

No publications were found for LOC100419436 Gene.

Products for LOC100419436 Gene

Sources for LOC100419436 Gene

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