Aliases for LOC100419037 Gene

Aliases for LOC100419037 Gene

  • Spermine Synthase Pseudogene 3

External Ids for LOC100419037 Gene

Previous GeneCards Identifiers for LOC100419037 Gene

  • GC05U901413
  • GC05P043208
  • GC05P043211
  • GC05P043216
  • GC05P043231

Summaries for LOC100419037 Gene

GeneCards Summary for LOC100419037 Gene

LOC100419037 (Spermine Synthase Pseudogene) is a Pseudogene.

Additional gene information for LOC100419037 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100419037 Gene

Genomics for LOC100419037 Gene

GeneHancer (GH) Regulatory Elements for LOC100419037 Gene

Promoters and enhancers for LOC100419037 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043207 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 500.7 +1.9 1900 2.2 OSR2 ZBTB11 BCOR GATA3 FOXA1 ZNF189 SCRT1 PRDM6 ZNF664 FEZF1 NIM1K ENSG00000249779 LOC100419037 EEF1A1P19 ZNF131 ENSG00000249888 lnc-HMGCS1-2 lnc-NIM1K-3 RF00017-4602
GH05J043191 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 -13.5 -13501 3 HNRNPK FOS ZNF639 ZIC2 ZBTB10 CLOCK ZNF423 ZBTB26 SAP30 RFX1 NIM1K lnc-HMGCS1-3 lnc-NIM1K-3 ZNF131 TMEM267 EEF1A1P19 ENSG00000249492 RPL29P12 C5orf34 ENSG00000215068
GH05J043197 Enhancer 0.7 Ensembl 0.4 -8.7 -8701 0.2 PHB2 CTBP1 NCOR1 RELA ZNF316 NFIC TRIM24 NFE2 EHMT2 TAL1 LOC100419037 NIM1K lnc-NIM1K-3 RF00017-4602
GH05J043200 Enhancer 0.3 Ensembl 0.4 -5.7 -5700 0.6 ZBTB33 ZNF131 LOC100419037 NIM1K lnc-NIM1K-3 RF00017-4602
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100419037 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100419037 Gene

Genomic Locations for LOC100419037 Gene
chr5:43,206,601-43,208,008
(GRCh38/hg38)
Size:
1,408 bases
Orientation:
Plus strand
chr5:43,206,811-43,207,913
(GRCh37/hg19)
Size:
1,103 bases
Orientation:
Plus strand

Genomic View for LOC100419037 Gene

Genes around LOC100419037 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100419037 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100419037 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100419037 Gene

Proteins for LOC100419037 Gene

Post-translational modifications for LOC100419037 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100419037 Gene

Domains & Families for LOC100419037 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100419037 Gene

Function for LOC100419037 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100419037 Gene

Localization for LOC100419037 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100419037 Gene

Pathways & Interactions for LOC100419037 Gene

PathCards logo

SuperPathways for LOC100419037 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100419037 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100419037 Gene

Drugs & Compounds for LOC100419037 Gene

No Compound Related Data Available

Transcripts for LOC100419037 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100419037 Gene

No ASD Table

Relevant External Links for LOC100419037 Gene

GeneLoc Exon Structure for
LOC100419037

No data available for mRNA/cDNA for LOC100419037 Gene

Expression for LOC100419037 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100419037 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100419037 Gene

This gene is overexpressed in Pituitary (x4.5).
genes like me logo Genes that share expression patterns with LOC100419037: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100419037 Gene

Orthologs for LOC100419037 Gene

No data available for Orthologs and Evolution for LOC100419037 Gene

Paralogs for LOC100419037 Gene

No data available for Paralogs for LOC100419037 Gene

Variants for LOC100419037 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100419037 Gene

Disorders for LOC100419037 Gene

No disorders were found for LOC100419037 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100419037 Gene

Publications for LOC100419037 Gene

No publications were found for LOC100419037 Gene.

No data available for Mastermind for LOC100419037 Gene

Products for LOC100419037 Gene

Sources for LOC100419037 Gene