Aliases for LOC100335030 Gene

Aliases for LOC100335030 Gene

  • FGFR1 Oncogene Partner 2 Pseudogene 3

External Ids for LOC100335030 Gene

Previous GeneCards Identifiers for LOC100335030 Gene

  • GC12U901289
  • GC12P049782

Summaries for LOC100335030 Gene

GeneCards Summary for LOC100335030 Gene

LOC100335030 (FGFR1 Oncogene Partner 2 Pseudogene) is a Pseudogene.

Additional gene information for LOC100335030 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100335030 Gene

Genomics for LOC100335030 Gene

GeneHancer (GH) Regulatory Elements for LOC100335030 Gene

Promoters and enhancers for LOC100335030 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J049389 Promoter/Enhancer 0.9 Ensembl ENCODE 500.7 +0.1 127 0.6 CTCF RAD21 ZBTB33 ZNF507 ZMYM3 EP300 ZNF202 TBP ZNF143 CHD2 ENSG00000257954 LOC100335030 SPATS2 KCNH3 C1QL4
GH12J049376 Enhancer 0.5 Ensembl 0.4 -13.7 -13673 0.6 OSR2 PRDM6 RFX5 GLIS1 INSM2 ZNF770 RUNX3 ZBTB44 C1QL4 KCNH3 MCRS1 CCDC65 piR-32285-017 SPATS2 LOC100335030
GH12J049386 Enhancer 0.3 Ensembl 0.7 -2.4 -2374 0.8 ZNF189 DNAJC22 LOC100335030 piR-32285-017 SPATS2
GH12J049372 Enhancer 0.4 Ensembl 0.4 -17.1 -17073 0.2 ZNF2 GFI1B IKZF2 MLLT1 piR-32285-017 KCNH3 MCRS1 SPATS2 LOC100335030
GH12J049374 Enhancer 0.3 Ensembl 0.4 -14.5 -14473 0.6 ZBTB33 ZNF7 KCNH3 MCRS1 SPATS2 piR-32285-017 LOC100335030
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100335030 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100335030 Gene

Genomic Locations for LOC100335030 Gene
chr12:49,389,174-49,392,335
(GRCh38/hg38)
Size:
3,162 bases
Orientation:
Plus strand
chr12:49,782,957-49,786,118
(GRCh37/hg19)
Size:
3,162 bases
Orientation:
Plus strand

Genomic View for LOC100335030 Gene

Genes around LOC100335030 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100335030 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100335030 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100335030 Gene

Proteins for LOC100335030 Gene

Post-translational modifications for LOC100335030 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100335030 Gene

Domains & Families for LOC100335030 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100335030 Gene

Function for LOC100335030 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100335030 Gene

Localization for LOC100335030 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100335030 Gene

Pathways & Interactions for LOC100335030 Gene

PathCards logo

SuperPathways for LOC100335030 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100335030 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100335030 Gene

Drugs & Compounds for LOC100335030 Gene

No Compound Related Data Available

Transcripts for LOC100335030 Gene

mRNA/cDNA for LOC100335030 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100335030 Gene

No ASD Table

Relevant External Links for LOC100335030 Gene

GeneLoc Exon Structure for
LOC100335030

Expression for LOC100335030 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100335030 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100335030 Gene

This gene is overexpressed in Brain - Cerebellum (x4.4).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100335030

SOURCE GeneReport for Unigene cluster for LOC100335030 Gene:

Hs.687044
genes like me logo Genes that share expression patterns with LOC100335030: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100335030 Gene

Orthologs for LOC100335030 Gene

No data available for Orthologs and Evolution for LOC100335030 Gene

Paralogs for LOC100335030 Gene

No data available for Paralogs for LOC100335030 Gene

Variants for LOC100335030 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100335030 Gene

Variant ID Type Subtype PubMed ID
dgv1497n100 CNV gain 25217958
nsv832405 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC100335030 Gene

Disorders for LOC100335030 Gene

No disorders were found for LOC100335030 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100335030 Gene

Publications for LOC100335030 Gene

No publications were found for LOC100335030 Gene.

No data available for Mastermind for LOC100335030 Gene

Products for LOC100335030 Gene

Sources for LOC100335030 Gene