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Aliases for LOC100294362 Gene

Subcategory (RNA class) for LOC100294362 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100294362 Gene

  • Uncharacterized LOC100294362 3
  • AC124319.2 5

External Ids for LOC100294362 Gene

Previous GeneCards Identifiers for LOC100294362 Gene

  • GC17M078327
  • GC17U901394

Summaries for LOC100294362 Gene

GeneCards Summary for LOC100294362 Gene

LOC100294362 (Uncharacterized LOC100294362) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC100294362 include Moyamoya Disease 2 and Anaplastic Ependymoma.

Additional gene information for LOC100294362 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100294362 Gene

Genomics for LOC100294362 Gene

GeneHancer (GH) Regulatory Elements for LOC100294362 Gene

Promoters and enhancers for LOC100294362 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J080414 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 656.4 +0.0 15 2.1 HDGF PKNOX1 CLOCK ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B LOC100294362 ENDOV PIR40280 CEP131 EIF4A3 TEPSIN
GH17J080413 Enhancer 0.2 Ensembl 650.7 +1.3 1267 0.2 ENDOV LOC100294362 PIR40280 PIR48159
GH17J079984 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 19.3 +425.1 425111 11.1 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 ZNF263 EIF4A3 CCDC40 LOC100294362 ENSG00000262768 ENGASE CBX2 TBC1D16 ENDOV SGSH CANT1
GH17J079835 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.2 +573.9 573898 11.5 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 ZNF610 CBX4 USP36 CCDC40 LOC100294362 ENDOV CBX8 ENSG00000262343
GH17J081033 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 -624.6 -624601 13.5 HDGF PKNOX1 CLOCK FOXA2 MLX ARNT ARID4B NEUROD1 SIN3A SLC30A9 BAIAP2 EIF4A3 HGS TEPSIN FAAP100 ACTG1 CEP131 ARHGDIA ALYREF SGSH
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100294362 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100294362 Gene

Genomic Locations for LOC100294362 Gene
chr17:80,351,828-80,415,168
(GRCh38/hg38)
Size:
63,341 bases
Orientation:
Minus strand
chr17:78,325,628-78,388,968
(GRCh37/hg19)
Size:
63,341 bases
Orientation:
Minus strand

Genomic View for LOC100294362 Gene

Genes around LOC100294362 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100294362 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100294362 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100294362 Gene

Proteins for LOC100294362 Gene

Post-translational modifications for LOC100294362 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100294362 Gene

Domains & Families for LOC100294362 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100294362 Gene

Function for LOC100294362 Gene

Phenotypes From GWAS Catalog for LOC100294362 Gene

Phenotypes for LOC100294362 Gene

genes like me logo Genes that share phenotypes with LOC100294362: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100294362 Gene

Localization for LOC100294362 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100294362 Gene

Pathways & Interactions for LOC100294362 Gene

SuperPathways for LOC100294362 Gene

No Data Available

Interacting Proteins for LOC100294362 Gene

Gene Ontology (GO) - Biological Process for LOC100294362 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100294362 Gene

Drugs & Compounds for LOC100294362 Gene

No Compound Related Data Available

Transcripts for LOC100294362 Gene

mRNA/cDNA for LOC100294362 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Unigene Clusters for LOC100294362 Gene

Uncharacterized LOC100294362:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100294362 Gene

No ASD Table

Relevant External Links for LOC100294362 Gene

GeneLoc Exon Structure for
LOC100294362

Expression for LOC100294362 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100294362 Gene

SOURCE GeneReport for Unigene cluster for LOC100294362 Gene:

Hs.657519
genes like me logo Genes that share expression patterns with LOC100294362: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100294362 Gene

Orthologs for LOC100294362 Gene

Evolution for LOC100294362 Gene

ENSEMBL:
Gene Tree for LOC100294362 (if available)
TreeFam:
Gene Tree for LOC100294362 (if available)

No data available for Orthologs for LOC100294362 Gene

Paralogs for LOC100294362 Gene

No data available for Paralogs for LOC100294362 Gene

Variants for LOC100294362 Gene

Sequence variations from dbSNP and Humsavar for LOC100294362 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs112735431 likely-pathogenic, risk-factor, Moyamoya disease 2 80,385,145(-) G/A/C intron_variant
rs138223459 uncertain-significance, Moyamoya disease 2 80,381,667(-) G/A/T intron_variant
rs139265462 uncertain-significance, Moyamoya disease 2 80,368,043(-) C/T intron_variant
rs148731719 uncertain-significance, Moyamoya disease 2 80,376,310(-) G/A intron_variant
rs148776624 uncertain-significance, Moyamoya disease 2 80,383,801(-) A/C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100294362 Gene

Variant ID Type Subtype PubMed ID
dgv189e215 CNV deletion 23714750
esv2311590 CNV deletion 18987734
esv24254 CNV gain+loss 19812545
esv2716376 CNV deletion 23290073
esv2716377 CNV deletion 23290073
esv3307084 CNV mobile element insertion 20981092
esv3641372 CNV loss 21293372
esv3641375 CNV loss 21293372
nsv952384 CNV deletion 24416366
nsv954541 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100294362 Gene

Disorders for LOC100294362 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LOC100294362 Gene - From: GeneCards

Disorder Aliases PubMed IDs
moyamoya disease 2
  • mymy2
anaplastic ependymoma
  • high-grade ependymoma
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC100294362

genes like me logo Genes that share disorders with LOC100294362: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC100294362 Gene

Publications for LOC100294362 Gene

  1. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. (PMID: 28339031) Cao Y … Cao D (International journal of oncology 2017) 3 58
  2. A genome-wide association study identifies RNF213 as the first Moyamoya disease gene. (PMID: 21048783) Kamada F … Kure S (Journal of human genetics 2011) 3 58

Products for LOC100294362 Gene

Sources for LOC100294362 Gene

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