LOC100289580 Gene (RNA Gene)

Uncharacterized LOC100289580

GC16P088731
GIFtS:
11
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Aliases for LOC100289580 Gene

Subcategory (RNA class) for LOC100289580 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC100289580 Gene

  • Uncharacterized LOC100289580 3
  • Novel Transcript, Antisense To FAM38A 5
  • NONHSAG020304.2 91
  • AC138028.2 5

External Ids for LOC100289580 Gene

Previous GeneCards Identifiers for LOC100289580 Gene

  • GC00U928401
  • GC16P088798

Summaries for LOC100289580 Gene

GeneCards Summary for LOC100289580 Gene

LOC100289580 (Uncharacterized LOC100289580) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LOC100289580 include Congenital Hemolytic Anemia.

Additional gene information for LOC100289580 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100289580 Gene

Genomics for LOC100289580 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100289580 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100289580 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100289580 gene promoter:
  • Brachyury
  • GR
  • GR-alpha
  • Olf-1
  • POU2F1
  • POU2F1a
  • RP58
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c

Genomic Locations for LOC100289580 Gene

Genomic Locations for LOC100289580 Gene
chr16:88,731,180-88,741,425
(GRCh38/hg38)
Size:
10,246 bases
Orientation:
Plus strand
chr16:88,797,588-88,807,826
(GRCh37/hg19)
Size:
10,239 bases
Orientation:
Plus strand

Genomic View for LOC100289580 Gene

Genes around LOC100289580 on UCSC Golden Path with GeneCards custom track
LOC100289580 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100289580 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100289580 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100289580 Gene

Proteins for LOC100289580 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC100289580 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100289580 Gene

Domains & Families for LOC100289580 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100289580 Gene

Function for LOC100289580 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LOC100289580 Gene

Phenotypes for LOC100289580 Gene

GenomeRNAi human phenotypes for LOC100289580:
genes like me logo Genes that share phenotypes with LOC100289580: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100289580 Gene

Localization for LOC100289580 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100289580 Gene

Pathways & Interactions for LOC100289580 Gene

PathCards logo

SuperPathways for LOC100289580 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100289580 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100289580 Gene

Drugs & Compounds for LOC100289580 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC100289580 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100289580 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EEBC_9606 lncRNA 3776 2

RefSeq: NR_103774,

NONCODE: NONHSAT144425.2,

URS00007720FD_9606 lncRNA 4528 1

Ensembl: ENST00000567968 (view in UCSC) ,

URS00000DB7B5_9606 lncRNA 1539 1

Ensembl: ENST00000440406 (view in UCSC) ,

URS0000606694_9606 lncRNA 4521 1

NONCODE: NONHSAT144427.2,

LOC100289580 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100289580 Gene

1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100289580 Gene

No ASD Table

Relevant External Links for LOC100289580 Gene

GeneLoc Exon Structure for
LOC100289580

Expression for LOC100289580 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100289580 Gene

mRNA expression in normal human tissues for LOC100289580 Gene
mRNA expression by GTEx for LOC100289580 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100289580

SOURCE GeneReport for Unigene cluster for LOC100289580 Gene:

Hs.437712
genes like me logo Genes that share expression patterns with LOC100289580: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100289580 Gene

Orthologs for LOC100289580 Gene

Evolution for LOC100289580 Gene

ENSEMBL:
Gene Tree for LOC100289580 (if available)
TreeFam:
Gene Tree for LOC100289580 (if available)

No data available for Orthologs for LOC100289580 Gene

Paralogs for LOC100289580 Gene

No data available for Paralogs for LOC100289580 Gene

Variants for LOC100289580 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100289580 Gene

SNP ID Clinical significance and condition Chr 16 pos Variation AA Info Type
638427 Uncertain Significance: Lymphedema, hereditary, III 88,731,902(+) G/T MISSENSE_VARIANT
708128 Likely Benign: not provided 88,734,804(+) G/A INTRON_VARIANT
708196 Benign: not provided 88,736,240(+) G/C MISSENSE_VARIANT
708553 Benign: not provided 88,737,957(+) G/A MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
709925 Likely Benign: not provided 88,733,654(+) C/G SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100289580 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100289580 Gene

Variant ID Type Subtype PubMed ID
dgv3064n100 CNV gain 25217958
dgv3065n100 CNV gain 25217958
esv2715032 CNV deletion 23290073
esv2715033 CNV deletion 23290073
esv2715034 CNV deletion 23290073
esv29457 CNV gain 19812545
esv998799 CNV insertion 20482838
nsv1061256 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1065973 CNV loss 25217958
nsv1160442 CNV deletion 26073780
nsv1927 CNV insertion 18451855
nsv471113 CNV loss 18288195
nsv471114 CNV gain 18288195
nsv482951 CNV loss 15286789
nsv517643 CNV loss 19592680
nsv573673 CNV loss 21841781
nsv573674 CNV gain 21841781
nsv573675 CNV loss 21841781
nsv833327 CNV loss 17160897
nsv952070 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100289580 Gene

Disorders for LOC100289580 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC100289580 Gene - From: GeneCards

Disorder Aliases PubMed IDs
congenital hemolytic anemia
  • congenital hemolytic anaemia
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC100289580: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100289580 Gene

Publications for LOC100289580 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

No data available for Mastermind for LOC100289580 Gene

Products for LOC100289580 Gene

Sources for LOC100289580 Gene