Aliases for LOC100289500 Gene

Aliases for LOC100289500 Gene

  • Zinc Finger AN1-Type Containing 1 Pseudogene 3

External Ids for LOC100289500 Gene

Previous GeneCards Identifiers for LOC100289500 Gene

  • GC00U924344
  • GC01P093176

Summaries for LOC100289500 Gene

GeneCards Summary for LOC100289500 Gene

LOC100289500 (Zinc Finger AN1-Type Containing 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100289500 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100289500 Gene

Genomics for LOC100289500 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100289500 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J092733 Enhancer 0.2 Ensembl 250.7 +1.5 1483 0.2 ENSG00000225505 LOC100289500 lnc-RPL5-4 H3P3 lnc-FAM69A-2 EVI5 GFI1
GH01J092736 Enhancer 0.5 Ensembl 0.7 +4.5 4483 0.2 CTCF RAD21 PKNOX1 RAD51 USF1 LOC100289500 H3P3 lnc-FAM69A-2 EVI5 GFI1
GH01J092727 Enhancer 0.4 Ensembl 0.7 -2.1 -2117 4.6 CEBPB EP300 SPI1 POLR2A EVI5 DIPK1A ENSG00000225505 LOC100289500 lnc-RPL5-4 piR-55194-014 lnc-FAM69A-2 GFI1
GH01J092748 Enhancer 0.6 Ensembl 0.4 +17.2 17204 0.4 ZNF654 REST TRIM22 CTCF RAD21 SMC3 RFX5 ELF1 ZNF143 ELF3 H3P3 EVI5 RPL5 RNU4-59P SNORD21 SNORA66 LOC100289500 lnc-FAM69A-2 GFI1
GH01J092739 Enhancer 0.3 Ensembl 0.4 +8.0 7983 1.6 EBF1 CEBPB DIPK1A EVI5 H3P3 LOC100289500 lnc-FAM69A-2 GFI1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100289500 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100289500 Gene

Latest Assembly
chr1:92,732,018-92,732,618
(GRCh38/hg38)
Size:
601 bases
Orientation:
Plus strand

Previous Assembly
chr1:93,197,575-93,198,175
(GRCh37/hg19 by Entrez Gene)
Size:
601 bases
Orientation:
Plus strand

Genomic View for LOC100289500 Gene

Genes around LOC100289500 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100289500 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100289500 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100289500 Gene

Proteins for LOC100289500 Gene

Post-translational modifications for LOC100289500 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100289500 Gene

Domains & Families for LOC100289500 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100289500 Gene

Function for LOC100289500 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100289500 Gene

Localization for LOC100289500 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100289500 Gene

Pathways & Interactions for LOC100289500 Gene

PathCards logo

SuperPathways for LOC100289500 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100289500 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100289500 Gene

Drugs & Compounds for LOC100289500 Gene

No Compound Related Data Available

Transcripts for LOC100289500 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100289500 Gene

No ASD Table

Relevant External Links for LOC100289500 Gene

GeneLoc Exon Structure for
LOC100289500

No data available for mRNA/cDNA for LOC100289500 Gene

Expression for LOC100289500 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100289500 Gene

genes like me logo Genes that share expression patterns with LOC100289500: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100289500 Gene

Orthologs for LOC100289500 Gene

No data available for Orthologs and Evolution for LOC100289500 Gene

Paralogs for LOC100289500 Gene

No data available for Paralogs for LOC100289500 Gene

Variants for LOC100289500 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100289500 Gene

Disorders for LOC100289500 Gene

No disorders were found for LOC100289500 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100289500 Gene

Publications for LOC100289500 Gene

No publications were found for LOC100289500 Gene.

No data available for Mastermind for LOC100289500 Gene

Products for LOC100289500 Gene

Sources for LOC100289500 Gene