Aliases for LOC100289333 Gene

Subcategory (RNA class) for LOC100289333 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100289333 Gene

  • Uncharacterized LOC100289333 3
  • NONHSAG024870.2 91
  • CTD-2666L21.1 3
  • HSALNG0124098 164
  • Lnc-ZNF136-1 165

External Ids for LOC100289333 Gene

Previous GeneCards Identifiers for LOC100289333 Gene

  • GC00U930025
  • GC19P012306
  • GC19P011880
  • GC19U901728
  • GC19P012195
  • GC19P012228
  • GC19P012251

Summaries for LOC100289333 Gene

GeneCards Summary for LOC100289333 Gene

LOC100289333 (Uncharacterized LOC100289333) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100289333 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100289333 Gene

Genomics for LOC100289333 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100289333 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012194 Promoter/Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 600.7 +0.6 578 2.2 POLR2A NR2F2 MAX ZBTB33 TAF1 ENSG00000234773 LOC100289333 lnc-ZNF44-2 ZNF625-ZNF20 ZNF433 DNASE2 ZNF20 ZNF69 ZNF763 LOC107984139
GH19J012202 Enhancer 0.5 ENCODE 0.4 +7.8 7758 0.2 CTCF REST RAD21 SMC3 ARID4B XRCC5 ENSG00000234773 LOC107984139 LOC100289333 ZNF136 MN298114-105
GH19J012199 Enhancer 0.3 Ensembl 0.7 +5.0 4978 1.4 ATF2 ENSG00000234773 LOC100289333 LOC107984139 ZNF136 MN298114-105
GH19J012232 Enhancer 0.2 Ensembl 0.3 +37.6 37578 0.6 piR-40154-080 piR-52261-116 piR-53431-329 ZNF44 ZNF433 ZNF788P ZNF20 lnc-ZNF625-ZNF20-2 LOC107984139 ENSG00000234773
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100289333 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100289333 gene promoter:
  • COMP1
  • Pbx1a

Genomic Locations for LOC100289333 Gene

Genomic Locations for LOC100289333 Gene
chr19:12,194,723-12,259,927
(GRCh38/hg38)
Size:
65,205 bases
Orientation:
Plus strand
chr19:12,305,830-12,348,582
(GRCh37/hg19)
Size:
42,753 bases
Orientation:
Plus strand

Genomic View for LOC100289333 Gene

Genes around LOC100289333 on UCSC Golden Path with GeneCards custom track
LOC100289333 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100289333 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100289333 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100289333 Gene

Proteins for LOC100289333 Gene

Post-translational modifications for LOC100289333 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100289333 Gene

Domains & Families for LOC100289333 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100289333 Gene

Function for LOC100289333 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100289333 Gene

Localization for LOC100289333 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100289333 Gene

Pathways & Interactions for LOC100289333 Gene

PathCards logo

SuperPathways for LOC100289333 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100289333 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100289333 Gene

Drugs & Compounds for LOC100289333 Gene

No Compound Related Data Available

Transcripts for LOC100289333 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100289333 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A4EA_9606 lncRNA 372 1

RefSeq: NR_104179,

URS00008B3D03_9606 lncRNA 1940 3

LncBook: HSALNT0255920,

LNCipedia: lnc-ZNF136-1:5,

NONCODE: NONHSAT061231.2,

URS00008BE083_9606 lncRNA 762 3

LncBook: HSALNT0255922,

LNCipedia: lnc-ZNF136-1:8,

NONCODE: NONHSAT061234.2,

URS00008B4515_9606 lncRNA 581 3

LncBook: HSALNT0255923,

LNCipedia: lnc-ZNF136-1:4,

NONCODE: NONHSAT061235.2,

URS00008BDF02_9606 lncRNA 469 3

LncBook: HSALNT0255921,

LNCipedia: lnc-ZNF136-1:6,

NONCODE: NONHSAT061232.2,

LOC100289333 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100289333 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100289333 Gene

No ASD Table

Relevant External Links for LOC100289333 Gene

GeneLoc Exon Structure for
LOC100289333

Expression for LOC100289333 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100289333 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100289333 Gene

This gene is overexpressed in Testis (x17.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100289333

SOURCE GeneReport for Unigene cluster for LOC100289333 Gene:

Hs.703794
genes like me logo Genes that share expression patterns with LOC100289333: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100289333 Gene

Orthologs for LOC100289333 Gene

No data available for Orthologs and Evolution for LOC100289333 Gene

Paralogs for LOC100289333 Gene

No data available for Paralogs for LOC100289333 Gene

Variants for LOC100289333 Gene

Additional dbSNP identifiers (rs#s) for LOC100289333 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100289333 Gene

Variant ID Type Subtype PubMed ID
dgv3430n100 CNV loss 25217958
nsv510754 CNV deletion 20534489
nsv578619 CNV loss 21841781
nsv833753 CNV loss 17160897
nsv963007 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100289333 Gene

Disorders for LOC100289333 Gene

No disorders were found for LOC100289333 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100289333 Gene

Publications for LOC100289333 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100289333 Gene

Products for LOC100289333 Gene

Sources for LOC100289333 Gene