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Aliases for LOC100289333 Gene

Subcategory (RNA class) for LOC100289333 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100289333 Gene

  • Uncharacterized LOC100289333 3
  • CTD-2666L21.1 3

External Ids for LOC100289333 Gene

Previous GeneCards Identifiers for LOC100289333 Gene

  • GC00U930025
  • GC19P012306
  • GC19P011880
  • GC19U901728

Summaries for LOC100289333 Gene

GeneCards Summary for LOC100289333 Gene

LOC100289333 (Uncharacterized LOC100289333) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100289333 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100289333 Gene

Genomics for LOC100289333 Gene

GeneHancer (GH) Regulatory Elements for LOC100289333 Gene

Promoters and enhancers for LOC100289333 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J012194 Promoter/Enhancer 1 Ensembl ENCODE 600.7 +0.4 378 2 POLR2A NR2F2 MAX ZBTB33 ENSG00000234773 LOC100289333 ZNF625-ZNF20 ZNF433 DNASE2 ZNF20 ZNF69 ZNF763 GC19P012228
GH19J012202 Enhancer 0.7 Ensembl ENCODE 0.4 +5.9 5934 3.5 CTCF RAD21 REST ARID4B XRCC5 ENSG00000234773 ZNF20 ZNF440 ZNF788P LOC100289333 GC19P012228
GH19J012205 Enhancer 0.2 Ensembl 0.4 +10.4 10386 0.4 LOC100289333 ENSG00000234773 GC19P012228
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100289333 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100289333 gene promoter:
  • COMP1
  • Pbx1a

Genomic Locations for LOC100289333 Gene

Genomic Locations for LOC100289333 Gene
chr19:12,195,015-12,207,574
(GRCh38/hg38)
Size:
12,560 bases
Orientation:
Plus strand
chr19:12,305,830-12,348,582
(GRCh37/hg19)
Size:
42,753 bases
Orientation:
Plus strand

Genomic View for LOC100289333 Gene

Genes around LOC100289333 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100289333 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100289333 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100289333 Gene

Proteins for LOC100289333 Gene

Post-translational modifications for LOC100289333 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100289333 Gene

Domains & Families for LOC100289333 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100289333 Gene

Function for LOC100289333 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100289333 Gene

Localization for LOC100289333 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100289333 Gene

Pathways & Interactions for LOC100289333 Gene

PathCards logo

SuperPathways for LOC100289333 Gene

No Data Available

Interacting Proteins for LOC100289333 Gene

Gene Ontology (GO) - Biological Process for LOC100289333 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100289333 Gene

Drugs & Compounds for LOC100289333 Gene

No Compound Related Data Available

Transcripts for LOC100289333 Gene

mRNA/cDNA for LOC100289333 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100289333 Gene

Uncharacterized LOC100289333:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100289333 Gene

No ASD Table

Relevant External Links for LOC100289333 Gene

GeneLoc Exon Structure for
LOC100289333

Expression for LOC100289333 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100289333 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100289333 Gene

This gene is overexpressed in Testis (x17.3).

SOURCE GeneReport for Unigene cluster for LOC100289333 Gene:

Hs.703794
genes like me logo Genes that share expression patterns with LOC100289333: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100289333 Gene

Orthologs for LOC100289333 Gene

No data available for Orthologs and Evolution for LOC100289333 Gene

Paralogs for LOC100289333 Gene

No data available for Paralogs for LOC100289333 Gene

Variants for LOC100289333 Gene

Sequence variations from dbSNP and Humsavar for LOC100289333 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000029239 -- 12,204,606(+) G/A intron_variant
rs1000080759 -- 12,207,213(+) A/G intron_variant
rs1000430404 -- 12,194,281(+) C/T upstream_transcript_variant
rs1000631145 -- 12,201,011(+) C/T intron_variant
rs1000710448 -- 12,194,162(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100289333 Gene

Variant ID Type Subtype PubMed ID
dgv3430n100 CNV loss 25217958
nsv510754 CNV deletion 20534489
nsv578619 CNV loss 21841781
nsv833753 CNV loss 17160897
nsv963007 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100289333 Gene

Disorders for LOC100289333 Gene

No disorders were found for LOC100289333 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100289333 Gene

Publications for LOC100289333 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC100289333 Gene

Products for LOC100289333 Gene

Sources for LOC100289333 Gene

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