Aliases for LOC100288866 Gene

Data sources for LOC100288866 Gene:

RNA type for LOC100288866 Gene

lncRNA

Aliases for LOC100288866 Gene

External Ids for LOC100288866 Gene

Previous GeneCards Identifiers for LOC100288866 Gene

  • GC00U930155
  • GC17M047583

Summaries for LOC100288866 Gene

GeneCards Summary for LOC100288866 Gene

LOC100288866 (Uncharacterized LOC100288866) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100288866 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288866 Gene

Genomics for LOC100288866 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100288866 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288866 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100288866 gene promoter:
  • CP2
  • GATA-2
  • GCNF
  • GCNF-1
  • GCNF-2
  • HOXA5
  • MAZR
  • POU2F1
  • POU2F1a

Genomic Locations for LOC100288866 Gene

Latest Assembly
chr17:49,502,138-49,574,065
(GRCh38/hg38)
Size:
71,928 bases
Orientation:
Minus strand

Previous Assembly
chr17:47,583,019-47,651,426
(GRCh37/hg19 by Entrez Gene)
Size:
68,408 bases
Orientation:
Minus strand

chr17:47,583,019-47,651,426
(GRCh37/hg19 by Ensembl)
Size:
68,408 bases
Orientation:
Minus strand

Genomic View for LOC100288866 Gene

Genes around LOC100288866 on UCSC Golden Path with GeneCards custom track
LOC100288866 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100288866 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288866 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288866 Gene

Proteins for LOC100288866 Gene

  • Protein details for LOC100288866 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    L0R501-L0R501_HUMAN
    Recommended name:
    Alternative protein LOC100288866
    Protein Accession:
    L0R501

    Protein attributes for LOC100288866 Gene

    Size:
    101 amino acids
    Molecular mass:
    10525 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC100288866 Gene

Post-translational modifications for LOC100288866 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288866 Gene

Domains & Families for LOC100288866 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288866 Gene

Function for LOC100288866 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288866 Gene

Localization for LOC100288866 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288866 Gene

Pathways & Interactions for LOC100288866 Gene

PathCards logo

SuperPathways for LOC100288866 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100288866 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288866 Gene

Drugs & Compounds for LOC100288866 Gene

No Compound Related Data Available

Transcripts for LOC100288866 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100288866 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000556010_9606 lncRNA 1224 4

RefSeq: NR_103773,

Ensembl: ENST00000514506 (view in UCSC) ,

LNCipedia: lnc-SPOP-2:1,

NONCODE: NONHSAT054542.2,

URS0001BE93E5_9606 lncRNA 4363 1

LncBook: HSALNT0242184,

URS00009B2B7B_9606 lncRNA 1221 1

NONCODE: NONHSAT176325.1,

LOC100288866 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100288866 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288866 Gene

No ASD Table

Relevant External Links for LOC100288866 Gene

GeneLoc Exon Structure for
LOC100288866

Expression for LOC100288866 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100288866 Gene

SOURCE GeneReport for Unigene cluster for LOC100288866 Gene:

Hs.720309
genes like me logo Genes that share expression patterns with LOC100288866: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288866 Gene

Orthologs for LOC100288866 Gene

Evolution for LOC100288866 Gene

ENSEMBL:
Gene Tree for LOC100288866 (if available)
TreeFam:
Gene Tree for LOC100288866 (if available)

No data available for Orthologs for LOC100288866 Gene

Paralogs for LOC100288866 Gene

No data available for Paralogs for LOC100288866 Gene

Variants for LOC100288866 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100288866 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
rs116693011 Benign: not provided 49,506,423(-) C/T
NM_002507.4(NGFR):c.333C>T (p.Tyr111=)
NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS
rs140781803 Benign: not provided 49,506,485(-) C/T
NM_002507.4(NGFR):c.395C>T (p.Ser132Leu)
MISSENSE_VARIANT,NON_CODING_TRANSCRIPT
rs141901124 Benign: not provided 49,511,949(-) G/A
NM_002507.4(NGFR):c.879G>A (p.Thr293=)
SYNONYMOUS
rs151178709 Benign: not provided 49,512,910(-) C/T
NM_002507.4(NGFR):c.1185C>T (p.Ser395=)
SYNONYMOUS
rs1597861987 Likely Benign: not provided 49,506,408(-) G/A
NM_002507.4(NGFR):c.318G>A (p.Val106=)
NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100288866 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100288866 Gene

Variant ID Type Subtype PubMed ID
nsv2078 CNV deletion 18451855
nsv478021 CNV novel sequence insertion 20440878
nsv833473 CNV gain+loss 17160897
nsv962339 CNV duplication 23825009

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100288866 Gene

Disorders for LOC100288866 Gene

Additional Disease Information for LOC100288866

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100288866 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100288866 Gene

Publications for LOC100288866 Gene

No publications were found for LOC100288866 Gene.

No data available for Mastermind for LOC100288866 Gene

Products for LOC100288866 Gene

Sources for LOC100288866 Gene