Aliases for LOC100288866 Gene

Subcategory (RNA class) for LOC100288866 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LOC100288866 Gene

  • Uncharacterized LOC100288866 3
  • Alternative Protein LOC100288866 13
  • Novel Transcript 5
  • NONHSAG022133 92
  • AC006487.1 5
  • Lnc-SPOP-2 168

External Ids for LOC100288866 Gene

Previous GeneCards Identifiers for LOC100288866 Gene

  • GC00U930155
  • GC17M047583

Summaries for LOC100288866 Gene

GeneCards Summary for LOC100288866 Gene

LOC100288866 (Uncharacterized LOC100288866) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100288866 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288866 Gene

Genomics for LOC100288866 Gene

GeneHancer (GH) Regulatory Elements for LOC100288866 Gene

Promoters and enhancers for LOC100288866 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J049573 Promoter/Enhancer 0.8 Ensembl dbSUPER 500.7 -0.4 -436 0.2 ZFHX2 TAF15 ZNF768 EGR2 RBM39 EZH2 LOC100288866 NXPH3 ENSG00000250310
GH17J049735 Promoter/Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 10.2 -169.2 -169152 15.6 ZNF300 USF1 SP1 JUND PHB2 ZNF10 ZBTB5 EP300 ZIC2 ZBTB11 LUC7L3 NXPH3 SPOP KAT7 ENSG00000230532 SLC35B1 ENSG00000250286 FLJ45513 TAC4 ENSG00000249406
GH17J049645 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 11.3 -72.7 -72721 3.4 ZBTB40 USF1 JUND FOS ZNF10 TRIM28 OSR2 ZSCAN18 FOSL2 BATF FLJ45513 SPOP LOC100288866 NXPH3 piR-41306-115 FJ601684-180 lnc-SLC35B1-2
GH17J049687 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 11.6 -114.2 -114216 2.5 TGIF2 TEAD1 ZSCAN9 NR2F2 FOXA2 CEBPB GABPA CEBPG TFDP1 SAP130 LOC100288866 NXPH3 SLC35B1 PHB ENSG00000250186 ENSG00000186244 FAM117A SPOP PHOSPHO1 SAMD14
GH17J049850 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 10.2 -277.6 -277611 1.6 CTCF NRF1 ZNF10 ZIC2 ZBTB10 TCF7 ZNF423 ZNF623 GABPA ZBTB26 ENSG00000248172 DLX3 SLC35B1 ENSG00000250310 LOC100288866 NXPH3 SPOP FAM117A TAC4 RF00017-2440
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288866 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100288866 gene promoter:
  • CP2
  • GATA-2
  • GCNF
  • GCNF-1
  • GCNF-2
  • HOXA5
  • MAZR
  • POU2F1
  • POU2F1a

Genomic Locations for LOC100288866 Gene

Genomic Locations for LOC100288866 Gene
chr17:49,505,657-49,574,065
(GRCh38/hg38)
Size:
68,409 bases
Orientation:
Minus strand
chr17:47,583,019-47,651,426
(GRCh37/hg19)
Size:
68,408 bases
Orientation:
Minus strand

Genomic View for LOC100288866 Gene

Genes around LOC100288866 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288866 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288866 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288866 Gene

Proteins for LOC100288866 Gene

  • Protein details for LOC100288866 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    L0R501-L0R501_HUMAN
    Recommended name:
    Alternative protein LOC100288866
    Protein Accession:
    L0R501

    Protein attributes for LOC100288866 Gene

    Size:
    101 amino acids
    Molecular mass:
    10525 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC100288866 Gene

Post-translational modifications for LOC100288866 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288866 Gene

Domains & Families for LOC100288866 Gene

Protein Domains for LOC100288866 Gene

ProtoNet:
genes like me logo Genes that share domains with LOC100288866: view

No data available for Gene Families , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288866 Gene

Function for LOC100288866 Gene

Phenotypes From GWAS Catalog for LOC100288866 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288866 Gene

Localization for LOC100288866 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288866 Gene

Pathways & Interactions for LOC100288866 Gene

PathCards logo

SuperPathways for LOC100288866 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100288866 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288866 Gene

Drugs & Compounds for LOC100288866 Gene

No Compound Related Data Available

Transcripts for LOC100288866 Gene

mRNA/cDNA for LOC100288866 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288866 Gene

No ASD Table

Relevant External Links for LOC100288866 Gene

GeneLoc Exon Structure for
LOC100288866

Expression for LOC100288866 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100288866 Gene

SOURCE GeneReport for Unigene cluster for LOC100288866 Gene:

Hs.720309
genes like me logo Genes that share expression patterns with LOC100288866: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288866 Gene

Orthologs for LOC100288866 Gene

Evolution for LOC100288866 Gene

ENSEMBL:
Gene Tree for LOC100288866 (if available)
TreeFam:
Gene Tree for LOC100288866 (if available)

No data available for Orthologs for LOC100288866 Gene

Paralogs for LOC100288866 Gene

No data available for Paralogs for LOC100288866 Gene

Variants for LOC100288866 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100288866 Gene

SNP ID Clinical significance and condition Chr 17 pos Variation AA Info Type
709492 Benign: not provided 49,511,882(-) C/G INTRON_VARIANT
717336 Likely Benign: not provided 49,512,814(-) G/A SYNONYMOUS_VARIANT
717409 Benign: not provided 49,506,423(-) C/T NON_CODING_TRANSCRIPT_VARIANT,SYNONYMOUS_VARIANT
724414 Benign: not provided 49,506,485(-) C/T MISSENSE_VARIANT,NON_CODING_TRANSCRIPT_VARIANT
736413 Benign: not provided 49,512,817(-) C/T SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100288866 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100288866 Gene

Variant ID Type Subtype PubMed ID
nsv2078 CNV deletion 18451855
nsv478021 CNV novel sequence insertion 20440878
nsv833473 CNV gain+loss 17160897
nsv962339 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100288866 Gene

Disorders for LOC100288866 Gene

No disorders were found for LOC100288866 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288866 Gene

Publications for LOC100288866 Gene

No publications were found for LOC100288866 Gene.

No data available for Mastermind for LOC100288866 Gene

Products for LOC100288866 Gene

Sources for LOC100288866 Gene