Aliases for LOC100288798 Gene

Subcategory (RNA class) for LOC100288798 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LOC100288798 Gene

  • Uncharacterized LOC100288798 3
  • NONHSAG010988 92
  • HSALNG0090706 167
  • Lnc-PCED1B-5 168

External Ids for LOC100288798 Gene

Previous GeneCards Identifiers for LOC100288798 Gene

  • GC00U924659
  • GC12P046781
  • GC12P043812

Summaries for LOC100288798 Gene

GeneCards Summary for LOC100288798 Gene

LOC100288798 (Uncharacterized LOC100288798) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100288798 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288798 Gene

Genomics for LOC100288798 Gene

GeneHancer (GH) Regulatory Elements for LOC100288798 Gene


GeneHancers around LOC100288798 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100288798 gene promoter:
  • aMEF-2
  • E2F
  • E2F-1
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • HNF-3beta
  • MEF-2A
  • TBP

Genomic Locations for LOC100288798 Gene

Genomic Locations for LOC100288798 Gene
chr12:46,383,676-46,652,579
(GRCh38/hg38)
Size:
268,904 bases
Orientation:
Plus strand

Genomic View for LOC100288798 Gene

Genes around LOC100288798 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288798 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288798 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288798 Gene

Proteins for LOC100288798 Gene

Post-translational modifications for LOC100288798 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288798 Gene

Domains & Families for LOC100288798 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288798 Gene

Function for LOC100288798 Gene

Phenotypes From GWAS Catalog for LOC100288798 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288798 Gene

Localization for LOC100288798 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288798 Gene

Pathways & Interactions for LOC100288798 Gene

PathCards logo

SuperPathways for LOC100288798 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100288798 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288798 Gene

Drugs & Compounds for LOC100288798 Gene

No Compound Related Data Available

Transcripts for LOC100288798 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288798 Gene

No ASD Table

Relevant External Links for LOC100288798 Gene

GeneLoc Exon Structure for
LOC100288798

Expression for LOC100288798 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100288798 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100288798

SOURCE GeneReport for Unigene cluster for LOC100288798 Gene:

Hs.730135
genes like me logo Genes that share expression patterns with LOC100288798: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288798 Gene

Orthologs for LOC100288798 Gene

No data available for Orthologs and Evolution for LOC100288798 Gene

Paralogs for LOC100288798 Gene

No data available for Paralogs for LOC100288798 Gene

Variants for LOC100288798 Gene

Additional dbSNP identifiers (rs#s) for LOC100288798 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100288798 Gene

Variant ID Type Subtype PubMed ID
esv2657597 CNV deletion 23128226
esv2671996 CNV deletion 23128226
esv26818 CNV loss 19812545
esv2745847 CNV deletion 23290073
esv3629404 CNV loss 21293372
esv3629405 CNV loss 21293372
esv3629406 CNV gain 21293372
esv3629407 CNV loss 21293372
nsv1075440 CNV duplication 25765185
nsv1119428 CNV insertion 24896259
nsv1142140 CNV tandem duplication 24896259
nsv472269 CNV novel sequence insertion 20440878
nsv498791 CNV loss 21111241
nsv558783 CNV loss 21841781
nsv692 CNV deletion 18451855
nsv832398 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100288798 Gene

Disorders for LOC100288798 Gene

Additional Disease Information for LOC100288798

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for LOC100288798 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100288798 Gene

Publications for LOC100288798 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 41 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54
  3. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. (PMID: 11752456) Xu XR … Han ZG (Proceedings of the National Academy of Sciences of the United States of America 2001) 3 54

No data available for Mastermind for LOC100288798 Gene

Products for LOC100288798 Gene

Sources for LOC100288798 Gene