Aliases for LOC100288666 Gene

Aliases for LOC100288666 Gene

  • Ribosomal Protein L7 Like 1 Pseudogene 3
  • Ribosomal Protein L7-Like 1 (RPL7L1) Pseudogene 5
  • AC103843.2 5

External Ids for LOC100288666 Gene

Previous GeneCards Identifiers for LOC100288666 Gene

  • GC00U925570
  • GC08M042580

Summaries for LOC100288666 Gene

GeneCards Summary for LOC100288666 Gene

LOC100288666 (Ribosomal Protein L7 Like 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100288666 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288666 Gene

Genomics for LOC100288666 Gene

GeneHancer (GH) Regulatory Elements for LOC100288666 Gene

Promoters and enhancers for LOC100288666 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J042739 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 0.4 -15.7 -15673 6.2 KAT7 SAP130 ARNT MXD4 SMARCA5 ELF1 DRAP1 ZGPAT NR2F1 CBX2 CHRNB3 piR-50444-452 LOC100288666 lnc-CHRNA6-2 RF00017-7015 RF00017-7012
GH08J042736 Enhancer 0.6 Ensembl ENCODE 0.4 -10.7 -10673 2.2 NANOG SPI1 JUN IKZF1 ZBTB20 ZNF770 RF00017-7015 lnc-CHRNA6-2 LOC100288666 piR-50444-452 CHRNB3 RF00017-7012
GH08J042731 Enhancer 0.4 Ensembl 0.4 -6.7 -6672 2.2 SCRT1 HLF SCRT2 LOC100288666 lnc-CHRNA6-2 RF00017-7015 piR-50444-452 CHRNB3 RF00017-7012
GH08J042745 Enhancer 0.4 ENCODE 0.4 -19.8 -19844 0.4 SCRT1 EGR2 SCRT2 ENSG00000255101 CHRNB3 piR-50444-452 LOC100288666 lnc-CHRNA6-2 RF00017-7015 RF00017-7012
GH08J042746 Enhancer 0.3 ENCODE 0.4 -19.5 -19485 0.2 SCRT1 SCRT2 ENSG00000255101 CHRNB3 piR-50444-452 LOC100288666 lnc-CHRNA6-2 RF00017-7015 RF00017-7012
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288666 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100288666 Gene

Genomic Locations for LOC100288666 Gene
chr8:42,725,547-42,726,228
(GRCh38/hg38)
Size:
682 bases
Orientation:
Minus strand
chr8:42,580,690-42,581,371
(GRCh37/hg19)
Size:
682 bases
Orientation:
Minus strand

Genomic View for LOC100288666 Gene

Genes around LOC100288666 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288666 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288666 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288666 Gene

Proteins for LOC100288666 Gene

Post-translational modifications for LOC100288666 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288666 Gene

Domains & Families for LOC100288666 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288666 Gene

Function for LOC100288666 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288666 Gene

Localization for LOC100288666 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288666 Gene

Pathways & Interactions for LOC100288666 Gene

PathCards logo

SuperPathways for LOC100288666 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100288666 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288666 Gene

Drugs & Compounds for LOC100288666 Gene

No Compound Related Data Available

Transcripts for LOC100288666 Gene

mRNA/cDNA for LOC100288666 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288666 Gene

No ASD Table

Relevant External Links for LOC100288666 Gene

GeneLoc Exon Structure for
LOC100288666

Expression for LOC100288666 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100288666 Gene

genes like me logo Genes that share expression patterns with LOC100288666: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288666 Gene

Orthologs for LOC100288666 Gene

Evolution for LOC100288666 Gene

ENSEMBL:
Gene Tree for LOC100288666 (if available)
TreeFam:
Gene Tree for LOC100288666 (if available)

No data available for Orthologs for LOC100288666 Gene

Paralogs for LOC100288666 Gene

No data available for Paralogs for LOC100288666 Gene

Variants for LOC100288666 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100288666 Gene

Disorders for LOC100288666 Gene

No disorders were found for LOC100288666 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288666 Gene

Publications for LOC100288666 Gene

No publications were found for LOC100288666 Gene.

No data available for Mastermind for LOC100288666 Gene

Products for LOC100288666 Gene

Sources for LOC100288666 Gene