Aliases for LOC100288628 Gene

Aliases for LOC100288628 Gene

  • SUMO Specific Peptidase 6 Pseudogene 3
  • SUMO1/Sentrin Specific Peptidase 6 Pseudogene 3

External Ids for LOC100288628 Gene

Previous GeneCards Identifiers for LOC100288628 Gene

  • GC00U927668
  • GC06M058398

Summaries for LOC100288628 Gene

GeneCards Summary for LOC100288628 Gene

LOC100288628 (SUMO Specific Peptidase 6 Pseudogene) is a Pseudogene.

Additional gene information for LOC100288628 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288628 Gene

Genomics for LOC100288628 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100288628 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J058059 Enhancer 0.5 Ensembl 0.4 +13.0 13021 1 WT1 ZNF189 FEZF1 ZNF660 HLF SP7 LINC00680 LOC100288628 piR-57450-002 LOC101927293 ENSG00000225096 PRIM2
GH06J057985 Enhancer 0.8 Ensembl ENCODE 0.2 +86.3 86326 1.5 BACH1 TCF12 IKZF2 TRIM22 PKNOX1 ARID3A DPF2 ELF1 NBN IKZF1 LINC00680 ENSG00000272541 piR-57450-002 LOC101927293 ENSG00000225096 LOC100288628 PRIM2
GH06J057983 Enhancer 0.2 ENCODE 0.2 +88.5 88530 1.9 LINC00680 piR-57450-002 LOC101927293 ENSG00000225096 LOC100288628 PRIM2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288628 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100288628 Gene

Genomic Locations for LOC100288628 Gene
chr6:58,071,691-58,072,722
(GRCh38/hg38)
Size:
1,032 bases
Orientation:
Minus strand
chr6:58,397,998-58,399,604
(GRCh37/hg19)
Size:
1,607 bases
Orientation:
Minus strand

Genomic View for LOC100288628 Gene

Genes around LOC100288628 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288628 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288628 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288628 Gene

Proteins for LOC100288628 Gene

Post-translational modifications for LOC100288628 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288628 Gene

Domains & Families for LOC100288628 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288628 Gene

Function for LOC100288628 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288628 Gene

Localization for LOC100288628 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288628 Gene

Pathways & Interactions for LOC100288628 Gene

PathCards logo

SuperPathways for LOC100288628 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100288628 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288628 Gene

Drugs & Compounds for LOC100288628 Gene

No Compound Related Data Available

Transcripts for LOC100288628 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288628 Gene

No ASD Table

Relevant External Links for LOC100288628 Gene

GeneLoc Exon Structure for
LOC100288628

No data available for mRNA/cDNA for LOC100288628 Gene

Expression for LOC100288628 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100288628 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100288628 Gene

This gene is overexpressed in Nerve - Tibial (x7.0) and Testis (x6.9).
genes like me logo Genes that share expression patterns with LOC100288628: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288628 Gene

Orthologs for LOC100288628 Gene

No data available for Orthologs and Evolution for LOC100288628 Gene

Paralogs for LOC100288628 Gene

No data available for Paralogs for LOC100288628 Gene

Variants for LOC100288628 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100288628 Gene

Disorders for LOC100288628 Gene

No disorders were found for LOC100288628 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288628 Gene

Publications for LOC100288628 Gene

  1. Common variants at 5q22 associate with pediatric eosinophilic esophagitis. (PMID: 20208534) Rothenberg ME … Hakonarson H (Nature genetics 2010) 3

No data available for Mastermind for LOC100288628 Gene

Products for LOC100288628 Gene

Sources for LOC100288628 Gene