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Aliases for LOC100288542 Gene

Subcategory (RNA class) for LOC100288542 Gene

lncRNA

Aliases for LOC100288542 Gene

  • Chromosome 14 Open Reading Frame 119 Pseudogene 3
  • Novel Pseudogene 5
  • AL157702.1 5

External Ids for LOC100288542 Gene

ORGUL Members for LOC100288542 Gene

Previous GeneCards Identifiers for LOC100288542 Gene

  • GC00U924040
  • GC09M116522

Summaries for LOC100288542 Gene

GeneCards Summary for LOC100288542 Gene

LOC100288542 (Chromosome 14 Open Reading Frame 119 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100288542 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100288542 Gene

Genomics for LOC100288542 Gene

GeneHancer (GH) Regulatory Elements for LOC100288542 Gene

Promoters and enhancers for LOC100288542 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J113754 Enhancer 0.4 Ensembl 0.7 +4.7 4718 1.4 SCRT2 NFIC RXRA LOC100288542 ENSG00000227482
GH09J113704 Enhancer 1 Ensembl ENCODE 0.2 +53.5 53501 2 ELF3 SP1 PPARG ZNF644 RXRA CEBPA GATAD2A RXRB RCOR2 FOXA2 ENSG00000227482 LOC100288542
GH09J113740 Enhancer 0.6 Ensembl 0.4 +18.3 18317 0.6 HDGF IKZF1 PKNOX1 IKZF2 ZIC2 ZKSCAN1 ZNF580 BCOR JUND ADNP PRPF4 LOC100288542 ENSG00000227482
GH09J113738 Enhancer 0.7 Ensembl ENCODE 0.3 +20.5 20518 0.6 ZBTB17 ZKSCAN1 ZNF768 ADNP KDM1A LOC100288542 ENSG00000227482
GH09J113720 Enhancer 0.8 FANTOM5 Ensembl ENCODE 0.3 +38.5 38525 1 ZIC2 ETS1 ZNF618 BSPRY LOC100288542 ENSG00000227482
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288542 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100288542 Gene

Genomic Locations for LOC100288542 Gene
chr9:113,758,994-113,759,419
(GRCh38/hg38)
Size:
426 bases
Orientation:
Minus strand
chr9:116,521,274-116,521,699
(GRCh37/hg19)
Size:
426 bases
Orientation:
Minus strand

Genomic View for LOC100288542 Gene

Genes around LOC100288542 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288542 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288542 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288542 Gene

Proteins for LOC100288542 Gene

Post-translational modifications for LOC100288542 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288542 Gene

Domains & Families for LOC100288542 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100288542 Gene

Function for LOC100288542 Gene

Phenotypes From GWAS Catalog for LOC100288542 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288542 Gene

Localization for LOC100288542 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288542 Gene

Pathways & Interactions for LOC100288542 Gene

PathCards logo

SuperPathways for LOC100288542 Gene

No Data Available

Interacting Proteins for LOC100288542 Gene

Gene Ontology (GO) - Biological Process for LOC100288542 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100288542 Gene

Drugs & Compounds for LOC100288542 Gene

No Compound Related Data Available

Transcripts for LOC100288542 Gene

mRNA/cDNA for LOC100288542 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288542 Gene

No ASD Table

Relevant External Links for LOC100288542 Gene

GeneLoc Exon Structure for
LOC100288542

Expression for LOC100288542 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100288542 Gene

genes like me logo Genes that share expression patterns with LOC100288542: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288542 Gene

Orthologs for LOC100288542 Gene

Evolution for LOC100288542 Gene

ENSEMBL:
Gene Tree for LOC100288542 (if available)
TreeFam:
Gene Tree for LOC100288542 (if available)

No data available for Orthologs for LOC100288542 Gene

Paralogs for LOC100288542 Gene

No data available for Paralogs for LOC100288542 Gene

Variants for LOC100288542 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100288542 Gene

Disorders for LOC100288542 Gene

No disorders were found for LOC100288542 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288542 Gene

Publications for LOC100288542 Gene

No publications were found for LOC100288542 Gene.

No data available for External Links for LOC100288542 Gene

Products for LOC100288542 Gene

Sources for LOC100288542 Gene

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