Aliases for LOC100288416 Gene

Aliases for LOC100288416 Gene

  • ATP Synthase Membrane Subunit F Pseudogene 3
  • ATP Synthase, H+ Transporting, Mitochondrial Fo Complex Subunit F2 Pseudogene 3
  • ATP Synthase F Chain (Mitochondrial) Pseudogene 5
  • AL359692.1 5

External Ids for LOC100288416 Gene

Previous GeneCards Identifiers for LOC100288416 Gene

  • GC00U924673
  • GC09P111599

Summaries for LOC100288416 Gene

GeneCards Summary for LOC100288416 Gene

LOC100288416 (ATP Synthase Membrane Subunit F Pseudogene) is a Pseudogene.

Additional gene information for LOC100288416 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288416 Gene

Genomics for LOC100288416 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100288416 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J108834 Enhancer 0.8 Ensembl ENCODE 600.7 +0.5 457 4.8 CEBPA CEBPB USF1 GABPA TEAD1 FOSL1 CTCF TAL1 FOS JUND LOC100288416 lnc-ACTL7A-3 ACTL7A RF00017-7801 ACTL7B
GH09J108842 Enhancer 0.5 ENCODE 0.4 +6.8 6763 0.2 ARHGAP35 PKNOX1 MGA SP1 L3MBTL2 CC2D1A RF00017-7801 LOC100288416 lnc-ACTL7A-3 ACTL7B
GH09J108831 Enhancer 0.3 ENCODE 0.7 -4.3 -4330 0.8 PRDM10 ACTL7B ACTL7A LOC100288416 lnc-ACTL7A-3 piR-56341-246
GH09J108844 Enhancer 0.3 Ensembl 0.4 +9.6 9611 2.1 PRDM6 ZNF664 RF00017-7801 ACTL7A CTNNAL1 LOC100288416 lnc-ACTL7A-3 ACTL7B
GH09J108830 Enhancer 0.3 Ensembl 0.4 -6.0 -6032 0.6 STAT1 piR-56341-246 ACTL7B ACTL7A LOC100288416 lnc-ACTL7A-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288416 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100288416 Gene

Genomic Locations for LOC100288416 Gene
chr9:108,836,333-108,836,597
(GRCh38/hg38)
Size:
265 bases
Orientation:
Plus strand
chr9:111,598,613-111,598,877
(GRCh37/hg19)
Size:
265 bases
Orientation:
Plus strand

Genomic View for LOC100288416 Gene

Genes around LOC100288416 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288416 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288416 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288416 Gene

Proteins for LOC100288416 Gene

Post-translational modifications for LOC100288416 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288416 Gene

Domains & Families for LOC100288416 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288416 Gene

Function for LOC100288416 Gene

Phenotypes From GWAS Catalog for LOC100288416 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288416 Gene

Localization for LOC100288416 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288416 Gene

Pathways & Interactions for LOC100288416 Gene

PathCards logo

SuperPathways for LOC100288416 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100288416 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288416 Gene

Drugs & Compounds for LOC100288416 Gene

No Compound Related Data Available

Transcripts for LOC100288416 Gene

mRNA/cDNA for LOC100288416 Gene

1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288416 Gene

No ASD Table

Relevant External Links for LOC100288416 Gene

GeneLoc Exon Structure for
LOC100288416

Expression for LOC100288416 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100288416 Gene

genes like me logo Genes that share expression patterns with LOC100288416: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288416 Gene

Orthologs for LOC100288416 Gene

Evolution for LOC100288416 Gene

ENSEMBL:
Gene Tree for LOC100288416 (if available)
TreeFam:
Gene Tree for LOC100288416 (if available)

No data available for Orthologs for LOC100288416 Gene

Paralogs for LOC100288416 Gene

No data available for Paralogs for LOC100288416 Gene

Variants for LOC100288416 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100288416 Gene

Disorders for LOC100288416 Gene

No disorders were found for LOC100288416 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288416 Gene

Publications for LOC100288416 Gene

No publications were found for LOC100288416 Gene.

No data available for Mastermind for LOC100288416 Gene

Products for LOC100288416 Gene

Sources for LOC100288416 Gene