Aliases for LOC100288254 Gene

Subcategory (RNA class) for LOC100288254 Gene

lncRNA

Number of RNA Genes sources:

1 / 14

Aliases for LOC100288254 Gene

  • Uncharacterized LOC100288254 3
  • Lnc-EFCAB9-30 168

External Ids for LOC100288254 Gene

Previous GeneCards Identifiers for LOC100288254 Gene

  • GC05P171723
  • GC05U902402

Summaries for LOC100288254 Gene

GeneCards Summary for LOC100288254 Gene

LOC100288254 (Uncharacterized LOC100288254) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100288254 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288254 Gene

Genomics for LOC100288254 Gene

GeneHancer (GH) Regulatory Elements for LOC100288254 Gene

Promoters and enhancers for LOC100288254 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J172293 Enhancer 1 Ensembl ENCODE 0.4 +7.4 7407 2.4 CTCF TCF12 ZBTB10 REST TGIF2 RAD21 TRIM22 SMC3 SIN3A ZNF263 EFCAB9 ENSG00000212529 LOC100288254 RF00017-5108 piR-38562-065 RF00017-5109
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288254 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100288254 gene promoter:
  • Max1
  • Oct-B1
  • oct-B2
  • oct-B3
  • POU2F1
  • POU2F1a
  • POU2F2
  • POU2F2 (Oct-2.1)
  • POU2F2C
  • Sox5

Genomic Locations for LOC100288254 Gene

Genomic Locations for LOC100288254 Gene
chr5:172,285,597-172,298,376
(GRCh38/hg38)
Size:
12,780 bases
Orientation:
Plus strand

Genomic View for LOC100288254 Gene

Genes around LOC100288254 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288254 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288254 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288254 Gene

Proteins for LOC100288254 Gene

Post-translational modifications for LOC100288254 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288254 Gene

Domains & Families for LOC100288254 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288254 Gene

Function for LOC100288254 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288254 Gene

Localization for LOC100288254 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288254 Gene

Pathways & Interactions for LOC100288254 Gene

PathCards logo

SuperPathways for LOC100288254 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100288254 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288254 Gene

Drugs & Compounds for LOC100288254 Gene

No Compound Related Data Available

Transcripts for LOC100288254 Gene

mRNA/cDNA for LOC100288254 Gene

1 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288254 Gene

No ASD Table

Relevant External Links for LOC100288254 Gene

GeneLoc Exon Structure for
LOC100288254

Expression for LOC100288254 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100288254

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288254 Gene

Orthologs for LOC100288254 Gene

No data available for Orthologs and Evolution for LOC100288254 Gene

Paralogs for LOC100288254 Gene

No data available for Paralogs for LOC100288254 Gene

Variants for LOC100288254 Gene

Additional dbSNP identifiers (rs#s) for LOC100288254 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100288254 Gene

Disorders for LOC100288254 Gene

No disorders were found for LOC100288254 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288254 Gene

Publications for LOC100288254 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

No data available for Mastermind for LOC100288254 Gene

Products for LOC100288254 Gene

Sources for LOC100288254 Gene