Aliases for LOC100288203 Gene

Aliases for LOC100288203 Gene

  • WASP Homolog Associated With Actin, Golgi Membranes And Microtubules Pseudogene 3
  • WAS Protein Homolog Associated With Actin, Golgi Membranes And Microtubules Pseudogene 3

External Ids for LOC100288203 Gene

Previous GeneCards Identifiers for LOC100288203 Gene

  • GC00U930602
  • GC15P030762

Summaries for LOC100288203 Gene

GeneCards Summary for LOC100288203 Gene

LOC100288203 (WASP Homolog Associated With Actin, Golgi Membranes And Microtubules Pseudogene) is a Pseudogene.

Additional gene information for LOC100288203 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288203 Gene

Genomics for LOC100288203 Gene

GeneHancer (GH) Regulatory Elements for LOC100288203 Gene

Promoters and enhancers for LOC100288203 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J030470 Promoter 0.4 Ensembl 750.6 +0.8 819 3.4 NRF1 ENSG00000215302 LOC105376704 LOC100288203 lnc-GOLGA8Q-4 piR-50348-002
GH15J030477 Enhancer 0.2 Ensembl 0.4 +7.4 7419 0.6 RF00017-1730 piR-43105-189 ENSG00000215302 lnc-GOLGA8Q-4 LOC100288203
GH15J030476 Enhancer 0.2 Ensembl 0.4 +6.5 6519 0.8 RF00017-1730 piR-43105-189 ENSG00000215302 lnc-GOLGA8Q-4 LOC100288203
GH15J030483 Enhancer 0.2 Ensembl 0.4 +13.6 13619 3 CHRFAM7A GOLGA8H ENSG00000270055 RF00017-1730 ENSG00000215302 lnc-GOLGA8Q-4 LOC100288203
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288203 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100288203 gene promoter:
  • AML1a
  • ATF-2
  • FOXD3
  • FOXF2
  • FOXJ2
  • FOXJ2 (long isoform)
  • NF-1
  • NF-1/L
  • Pbx1a
  • YY1

Genomic Locations for LOC100288203 Gene

Genomic Locations for LOC100288203 Gene
chr15:30,470,682-30,484,687
(GRCh38/hg38)
Size:
14,006 bases
Orientation:
Plus strand
chr15:30,762,982-30,766,732
(GRCh37/hg19)
Size:
3,751 bases
Orientation:
Plus strand

Genomic View for LOC100288203 Gene

Genes around LOC100288203 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288203 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288203 Gene

Proteins for LOC100288203 Gene

Post-translational modifications for LOC100288203 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288203 Gene

Domains & Families for LOC100288203 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288203 Gene

Function for LOC100288203 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288203 Gene

Localization for LOC100288203 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288203 Gene

Pathways & Interactions for LOC100288203 Gene

PathCards logo

SuperPathways for LOC100288203 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100288203 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100288203 Gene

Drugs & Compounds for LOC100288203 Gene

No Compound Related Data Available

Transcripts for LOC100288203 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288203 Gene

No ASD Table

Relevant External Links for LOC100288203 Gene

GeneLoc Exon Structure for
LOC100288203

No data available for mRNA/cDNA for LOC100288203 Gene

Expression for LOC100288203 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100288203 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC100288203 Gene



Protein tissue co-expression partners for LOC100288203 Gene

- Elite partner
genes like me logo Genes that share expression patterns with LOC100288203: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288203 Gene

Orthologs for LOC100288203 Gene

No data available for Orthologs and Evolution for LOC100288203 Gene

Paralogs for LOC100288203 Gene

No data available for Paralogs for LOC100288203 Gene

Variants for LOC100288203 Gene

Sequence variations from dbSNP and Humsavar for LOC100288203 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000340378 -- 30,487,362(+) G/A intron_variant
rs1000478805 -- 30,486,007(+) C/A intron_variant
rs1000511019 -- 30,476,634(+) C/T intron_variant
rs1000540357 -- 30,475,234(+) A/G intron_variant
rs1001222165 -- 30,488,099(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100288203 Gene

Disorders for LOC100288203 Gene

No disorders were found for LOC100288203 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288203 Gene

Publications for LOC100288203 Gene

No publications were found for LOC100288203 Gene.

No data available for External Links for LOC100288203 Gene

Products for LOC100288203 Gene

Sources for LOC100288203 Gene