Aliases for LOC100288162 Gene

Subcategory (RNA class) for LOC100288162 Gene

ncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LOC100288162 Gene

  • Uncharacterized LOC100288162 3
  • NONHSAG018689.2 91
  • Lnc-NTAN1-3 165

External Ids for LOC100288162 Gene

Previous GeneCards Identifiers for LOC100288162 Gene

  • GC00U923995
  • GC16M015020

Summaries for LOC100288162 Gene

GeneCards Summary for LOC100288162 Gene

LOC100288162 (Uncharacterized LOC100288162) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100288162 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288162 Gene

Genomics for LOC100288162 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100288162 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J014928 Enhancer 0.3 Ensembl 600.7 -0.8 -818 0.2 ZNF444 PCBP1 LOC100288162 piR-51780-001 LOC100505915 MIR6770-1 NPIPA1 PKD1P3 PKD1P3-NPIPA1 PDXDC1
GH16J014925 Enhancer 0.2 Ensembl 600.7 +1.9 1882 0.8 LOC100288162 MIR6511A1 piR-51780-001 piR-50065-001 piR-54150-001 NPIPA1 lnc-NPIPA1-4 PKD1P3 PKD1P3-NPIPA1 PDXDC1
GH16J014926 Enhancer 0.2 Ensembl 600.7 +0.8 782 0.6 LOC100288162 MIR6511A1 piR-51780-001 piR-54150-001 NPIPA1 PKD1P3 PKD1P3-NPIPA1 PDXDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288162 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100288162 gene promoter:
  • Arnt
  • c-Ets-1
  • c-Myc
  • GATA-3
  • HEN1
  • Max1
  • Pax-3
  • PPAR-gamma1
  • PPAR-gamma2
  • SEF-1 (1)

Genomic Locations for LOC100288162 Gene

Genomic Locations for LOC100288162 Gene
chr16:14,925,750-14,927,283
(GRCh38/hg38)
Size:
1,534 bases
Orientation:
Minus strand
chr16:15,019,607-15,021,134
(GRCh37/hg19)
Size:
1,528 bases
Orientation:
Minus strand

Genomic View for LOC100288162 Gene

Genes around LOC100288162 on UCSC Golden Path with GeneCards custom track
LOC100288162 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100288162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288162 Gene

Proteins for LOC100288162 Gene

Post-translational modifications for LOC100288162 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288162 Gene

Domains & Families for LOC100288162 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288162 Gene

Function for LOC100288162 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288162 Gene

Localization for LOC100288162 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288162 Gene

Pathways & Interactions for LOC100288162 Gene

PathCards logo

SuperPathways for LOC100288162 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100288162 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288162 Gene

Drugs & Compounds for LOC100288162 Gene

No Compound Related Data Available

Transcripts for LOC100288162 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100288162 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075BA8F_9606 lncRNA 1076 3

RefSeq: NR_103772,

LNCipedia: lnc-NTAN1-3:1,

NONCODE: NONHSAT140724.2,

LOC100288162 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100288162 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288162 Gene

No ASD Table

Relevant External Links for LOC100288162 Gene

GeneLoc Exon Structure for
LOC100288162

Expression for LOC100288162 Gene

SOURCE GeneReport for Unigene cluster for LOC100288162 Gene:

Hs.744813
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288162 Gene

Orthologs for LOC100288162 Gene

No data available for Orthologs and Evolution for LOC100288162 Gene

Paralogs for LOC100288162 Gene

No data available for Paralogs for LOC100288162 Gene

Variants for LOC100288162 Gene

Additional dbSNP identifiers (rs#s) for LOC100288162 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100288162 Gene

Variant ID Type Subtype PubMed ID
dgv111n111 CNV duplication 26073780
dgv112n111 CNV duplication 26073780
dgv2738n100 CNV gain 25217958
dgv2740n100 CNV loss 25217958
dgv2741n100 CNV gain+loss 25217958
dgv2742n100 CNV gain 25217958
dgv2744n100 CNV loss 25217958
dgv2745n100 CNV gain 25217958
dgv2746n100 CNV gain+loss 25217958
dgv2747n100 CNV loss 25217958
dgv2749n100 CNV gain 25217958
dgv2750n100 CNV loss 25217958
dgv2751n100 CNV gain 25217958
dgv2752n100 CNV gain+loss 25217958
dgv2753n100 CNV loss 25217958
dgv2754n100 CNV loss 25217958
dgv2755n100 CNV gain 25217958
dgv2756n100 CNV loss 25217958
dgv2757n100 CNV gain+loss 25217958
dgv2775n100 CNV gain 25217958
dgv2776n100 CNV gain+loss 25217958
dgv2777n100 CNV loss 25217958
dgv2781n100 CNV gain+loss 25217958
dgv2782n100 CNV loss 25217958
dgv2783n100 CNV gain 25217958
dgv2784n100 CNV gain 25217958
dgv2n1 OTHER inversion 15895083
dgv4924n54 CNV gain 21841781
dgv791e212 CNV loss 25503493
esv22206 CNV gain+loss 19812545
esv2714015 CNV deletion 23290073
esv2751550 CNV gain 17911159
esv2758632 CNV gain+loss 17122850
esv2758633 CNV gain+loss 17122850
esv2758634 CNV gain+loss 17122850
esv2760416 CNV gain+loss 21179565
esv2762254 CNV gain+loss 21179565
esv2762276 CNV gain+loss 21179565
esv28069 CNV gain+loss 19812545
esv28183 CNV gain+loss 19812545
esv32598 CNV gain 17666407
esv33614 CNV gain+loss 17666407
esv34419 CNV gain 17911159
esv3570331 CNV gain 25503493
esv3570398 CNV gain 25503493
esv3582069 CNV loss 25503493
esv3584701 CNV loss 24956385
nsv1038955 CNV loss 25217958
nsv1043239 CNV gain 25217958
nsv1047898 CNV loss 25217958
nsv1048002 CNV gain 25217958
nsv1049647 CNV gain+loss 25217958
nsv1124728 CNV duplication 24896259
nsv1125134 CNV deletion 24896259
nsv1128733 CNV duplication 24896259
nsv1141278 CNV duplication 24896259
nsv1141279 CNV duplication 24896259
nsv1146292 CNV duplication 26484159
nsv1149967 CNV duplication 26484159
nsv1160344 CNV deletion 26073780
nsv1160345 CNV duplication 26073780
nsv1160346 CNV duplication 26073780
nsv1160365 CNV duplication 26073780
nsv136 OTHER inversion 15895083
nsv1751 CNV deletion 18451855
nsv428319 CNV loss 18775914
nsv428320 CNV loss 18775914
nsv433435 CNV gain 18776910
nsv433436 CNV gain 18776910
nsv435664 CNV deletion 17901297
nsv442710 CNV gain 18776908
nsv457428 CNV gain 19166990
nsv499081 OTHER inversion 21111241
nsv499138 OTHER inversion 21111241
nsv509599 CNV insertion 20534489
nsv509601 CNV insertion 20534489
nsv511045 OTHER complex 20534489
nsv7277 OTHER inversion 18451855
nsv7278 OTHER inversion 18451855
nsv819280 CNV loss 19587683
nsv820784 CNV deletion 20802225
nsv820818 CNV deletion 20802225
nsv9355 CNV gain+loss 18304495
nsv9376 CNV gain 18304495
nsv952930 CNV deletion 24416366
nsv952938 CNV deletion 24416366
nsv952942 CNV deletion 24416366
nsv974762 CNV duplication 23825009
nsv977919 CNV duplication 23825009
nsv977929 CNV duplication 23825009
nsv984387 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100288162 Gene

Disorders for LOC100288162 Gene

No disorders were found for LOC100288162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288162 Gene

Publications for LOC100288162 Gene

No publications were found for LOC100288162 Gene.

No data available for Mastermind for LOC100288162 Gene

Products for LOC100288162 Gene

Sources for LOC100288162 Gene