Aliases for LOC100288123 Gene

Subcategory (RNA class) for LOC100288123 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LOC100288123 Gene

  • Uncharacterized LOC100288123 3
  • Novel Transcript, Antisense To REXO1 5
  • NONHSAG024393 94
  • HSALNG0123085 169
  • Lnc-ONECUT3-1 170
  • AC012615.6 5

External Ids for LOC100288123 Gene

Previous GeneCards Identifiers for LOC100288123 Gene

  • GC00U925520

Summaries for LOC100288123 Gene

GeneCards Summary for LOC100288123 Gene

LOC100288123 (Uncharacterized LOC100288123) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100288123 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288123 Gene

Genomics for LOC100288123 Gene

GeneHancer (GH) Regulatory Elements for LOC100288123 Gene

Promoters and enhancers for LOC100288123 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288123 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100288123 gene promoter:
  • AhR
  • Arnt
  • CREB
  • deltaCREB
  • E47
  • GR
  • GR-alpha
  • Max1
  • p53
  • PPAR-gamma2

Genomic Locations for LOC100288123 Gene

Genomic Locations for LOC100288123 Gene
chr19:1,822,089-1,824,545
(GRCh38/hg38)
Size:
2,457 bases
Orientation:
Plus strand
chr19:1,822,088-1,824,544
(GRCh37/hg19)
Size:
2,457 bases
Orientation:
Plus strand

Genomic View for LOC100288123 Gene

Genes around LOC100288123 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288123 Gene

Proteins for LOC100288123 Gene

Post-translational modifications for LOC100288123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288123 Gene

Domains & Families for LOC100288123 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288123 Gene

Function for LOC100288123 Gene

Phenotypes From GWAS Catalog for LOC100288123 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288123 Gene

Localization for LOC100288123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288123 Gene

Pathways & Interactions for LOC100288123 Gene

PathCards logo

SuperPathways for LOC100288123 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100288123 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100288123 Gene

Drugs & Compounds for LOC100288123 Gene

No Compound Related Data Available

Transcripts for LOC100288123 Gene

mRNA/cDNA for LOC100288123 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(7) RNACentral transcripts :
(5) NONCODE transcripts :
(1) LNCipedia transcripts :
(2) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288123 Gene

No ASD Table

Relevant External Links for LOC100288123 Gene

GeneLoc Exon Structure for
LOC100288123

Expression for LOC100288123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100288123 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100288123 Gene

This gene is overexpressed in Testis (x4.3).

SOURCE GeneReport for Unigene cluster for LOC100288123 Gene:

Hs.662426
genes like me logo Genes that share expression patterns with LOC100288123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288123 Gene

Orthologs for LOC100288123 Gene

Evolution for LOC100288123 Gene

ENSEMBL:
Gene Tree for LOC100288123 (if available)
TreeFam:
Gene Tree for LOC100288123 (if available)

No data available for Orthologs for LOC100288123 Gene

Paralogs for LOC100288123 Gene

No data available for Paralogs for LOC100288123 Gene

Variants for LOC100288123 Gene

Sequence variations from dbSNP and Humsavar for LOC100288123 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000609783 -- 1,820,176(+) T/C/G upstream_transcript_variant
rs1001200123 -- 1,821,108(+) G/A upstream_transcript_variant
rs1001232879 -- 1,824,941(+) G/A downstream_transcript_variant
rs1002214475 -- 1,820,177(+) G/A upstream_transcript_variant
rs1002474917 -- 1,824,213(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100288123 Gene

Variant ID Type Subtype PubMed ID
esv32942 CNV gain+loss 17666407
esv3893156 CNV loss 25118596
nsv1160560 CNV deletion 26073780
nsv470107 CNV loss 18288195
nsv578337 CNV gain 21841781
nsv953942 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100288123 Gene

Disorders for LOC100288123 Gene

No disorders were found for LOC100288123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100288123 Gene

Publications for LOC100288123 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LOC100288123 Gene

Products for LOC100288123 Gene

Sources for LOC100288123 Gene