Aliases for LOC100288123 Gene

Subcategory (RNA class) for LOC100288123 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100288123 Gene

  • Uncharacterized LOC100288123 3
  • Novel Transcript, Antisense To REXO1 5
  • NONHSAG024393.2 91
  • Lnc-ONECUT3-1 165
  • HSALNG0123085 164
  • AC012615.6 5

External Ids for LOC100288123 Gene

Previous GeneCards Identifiers for LOC100288123 Gene

  • GC00U925520

Summaries for LOC100288123 Gene

GeneCards Summary for LOC100288123 Gene

LOC100288123 (Uncharacterized LOC100288123) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100288123 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100288123 Gene

Genomics for LOC100288123 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100288123 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100288123 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100288123 gene promoter:
  • AhR
  • Arnt
  • CREB
  • deltaCREB
  • E47
  • GR
  • GR-alpha
  • Max1
  • p53
  • PPAR-gamma2

Genomic Locations for LOC100288123 Gene

Genomic Locations for LOC100288123 Gene
chr19:1,822,089-1,824,545
(GRCh38/hg38)
Size:
2,457 bases
Orientation:
Plus strand
chr19:1,822,088-1,824,544
(GRCh37/hg19)
Size:
2,457 bases
Orientation:
Plus strand

Genomic View for LOC100288123 Gene

Genes around LOC100288123 on UCSC Golden Path with GeneCards custom track
LOC100288123 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100288123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288123 Gene

Proteins for LOC100288123 Gene

Post-translational modifications for LOC100288123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288123 Gene

Domains & Families for LOC100288123 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100288123 Gene

Function for LOC100288123 Gene

Phenotypes From GWAS Catalog for LOC100288123 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288123 Gene

Localization for LOC100288123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288123 Gene

Pathways & Interactions for LOC100288123 Gene

PathCards logo

SuperPathways for LOC100288123 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100288123 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100288123 Gene

Drugs & Compounds for LOC100288123 Gene

No Compound Related Data Available

Transcripts for LOC100288123 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100288123 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00008B5373_9606 lncRNA 272 4

Ensembl: ENST00000590531 (view in UCSC) ,

LncBook: HSALNT0254331,

LNCipedia: lnc-ONECUT3-1:3,

NONCODE: NONHSAT060365.2,

URS00008B5E98_9606 lncRNA 477 2

Ensembl: ENST00000587741 (view in UCSC) ,

NONCODE: NONHSAT060366.2,

URS0000A7EE00_9606 lncRNA 1697 1

Ensembl: ENST00000593201 (view in UCSC) ,

URS0000CCDFA5_9606 lncRNA 1378 1

RefSeq: NR_152847,

URS00009BDEB6_9606 lncRNA 692 2

LncBook: HSALNT0254329,

NONCODE: NONHSAT179338.1,

LOC100288123 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100288123 Gene

2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288123 Gene

No ASD Table

Relevant External Links for LOC100288123 Gene

GeneLoc Exon Structure for
LOC100288123

Expression for LOC100288123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100288123 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100288123 Gene

This gene is overexpressed in Testis (x4.3).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100288123

SOURCE GeneReport for Unigene cluster for LOC100288123 Gene:

Hs.662426
genes like me logo Genes that share expression patterns with LOC100288123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288123 Gene

Orthologs for LOC100288123 Gene

Evolution for LOC100288123 Gene

ENSEMBL:
Gene Tree for LOC100288123 (if available)
TreeFam:
Gene Tree for LOC100288123 (if available)

No data available for Orthologs for LOC100288123 Gene

Paralogs for LOC100288123 Gene

No data available for Paralogs for LOC100288123 Gene

Variants for LOC100288123 Gene

Additional dbSNP identifiers (rs#s) for LOC100288123 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100288123 Gene

Variant ID Type Subtype PubMed ID
esv32942 CNV gain+loss 17666407
esv3893156 CNV loss 25118596
nsv1160560 CNV deletion 26073780
nsv470107 CNV loss 18288195
nsv578337 CNV gain 21841781
nsv953942 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100288123 Gene

Disorders for LOC100288123 Gene

Additional Disease Information for LOC100288123

No disorders were found for LOC100288123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100288123 Gene

Publications for LOC100288123 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100288123 Gene

Products for LOC100288123 Gene

Sources for LOC100288123 Gene