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Aliases for LOC100288123 Gene

Subcategory (RNA class) for LOC100288123 Gene

antisense

Quality Score for this RNA gene is

2

Aliases for LOC100288123 Gene

  • Uncharacterized LOC100288123 3
  • AC012615.6 5

External Ids for LOC100288123 Gene

ORGUL Members for LOC100288123 Gene

Previous GeneCards Identifiers for LOC100288123 Gene

  • GC00U925520

Summaries for LOC100288123 Gene

GeneCards Summary for LOC100288123 Gene

LOC100288123 (Uncharacterized LOC100288123) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for LOC100288123 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100288123 Gene

Genomics for LOC100288123 Gene

GeneHancer (GH) Regulatory Elements for LOC100288123 Gene

Promoters and enhancers for LOC100288123 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I001236 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 82.9 -565.2 -565230 41.1 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 CIRBP C19orf24 MIDN CBARP ATP5F1D SF3A2 TCF3 TMEM259 LOC100288123 PTBP1
GH19I001202 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 78.9 -615.3 -615332 8 ZFP64 FEZF1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ZC3H11A STK11 CIRBP TMEM259 DAZAP1 LOC100288123 TCF3 PTBP1 GRIN3B DOT1L ENSG00000267317
GH19I001382 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 72.8 -438.1 -438063 2.2 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 TRN-GTT2-6 TRF-GAA1-6 PIR60227 NDUFS7 PIR43938 CIRBP SF3A2 TMEM259 MUM1 TCF3
GH19I001019 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 66.4 -800.9 -800882 4.4 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 ZNF143 TMEM259 GC19P001025 RNU6-2 TCF3 LOC100288123 DAZAP1 GRIN3B PTBP1 CIRBP MED16
GH19I001437 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 65.1 -382.6 -382606 4.3 MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC RPS15 ENSG00000268798 SF3A2 TCF3 TMEM259 LOC100288123 PTBP1 DAZAP1 MED16 ENSG00000267317
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100288123 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100288123 gene promoter:

Genomic Locations for LOC100288123 Gene

Genomic Locations for LOC100288123 Gene
chr19:1,822,089-1,824,543
(GRCh38/hg38)
Size:
2,455 bases
Orientation:
Plus strand
chr19:1,822,088-1,824,544
(GRCh37/hg19)

Genomic View for LOC100288123 Gene

Genes around LOC100288123 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100288123 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100288123 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100288123 Gene

Proteins for LOC100288123 Gene

Post-translational modifications for LOC100288123 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100288123 Gene

Domains & Families for LOC100288123 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100288123 Gene

Function for LOC100288123 Gene

Phenotypes From GWAS Catalog for LOC100288123 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100288123 Gene

Localization for LOC100288123 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100288123 Gene

Pathways & Interactions for LOC100288123 Gene

SuperPathways for LOC100288123 Gene

No Data Available

Interacting Proteins for LOC100288123 Gene

Gene Ontology (GO) - Biological Process for LOC100288123 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100288123 Gene

Drugs & Compounds for LOC100288123 Gene

No Compound Related Data Available

Transcripts for LOC100288123 Gene

mRNA/cDNA for LOC100288123 Gene

(3) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100288123 Gene

Uncharacterized LOC100288123:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100288123 Gene

No ASD Table

Relevant External Links for LOC100288123 Gene

GeneLoc Exon Structure for
LOC100288123

Expression for LOC100288123 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100288123 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100288123 Gene

This gene is overexpressed in Testis (x4.3).

SOURCE GeneReport for Unigene cluster for LOC100288123 Gene:

Hs.662426
genes like me logo Genes that share expression patterns with LOC100288123: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100288123 Gene

Orthologs for LOC100288123 Gene

Evolution for LOC100288123 Gene

ENSEMBL:
Gene Tree for LOC100288123 (if available)
TreeFam:
Gene Tree for LOC100288123 (if available)

No data available for Orthologs for LOC100288123 Gene

Paralogs for LOC100288123 Gene

No data available for Paralogs for LOC100288123 Gene

Variants for LOC100288123 Gene

Sequence variations from dbSNP and Humsavar for LOC100288123 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000609783 -- 1,820,176(+) T/C/G upstream_transcript_variant
rs1001200123 -- 1,821,108(+) G/A upstream_transcript_variant
rs1001232879 -- 1,824,941(+) G/A downstream_transcript_variant
rs1002214475 -- 1,820,177(+) G/A upstream_transcript_variant
rs1002474917 -- 1,824,213(+) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100288123 Gene

Variant ID Type Subtype PubMed ID
esv32942 CNV gain+loss 17666407
esv3893156 CNV loss 25118596
nsv1160560 CNV deletion 26073780
nsv470107 CNV loss 18288195
nsv578337 CNV gain 21841781
nsv953942 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100288123 Gene

Disorders for LOC100288123 Gene

Additional Disease Information for LOC100288123

No disorders were found for LOC100288123 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100288123 Gene

Publications for LOC100288123 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100288123 Gene

Sources for LOC100288123 Gene

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