Aliases for LOC100287896 Gene

Aliases for LOC100287896 Gene

  • Uncharacterized LOC100287896 3 5
  • Uncharacterized Protein LOC100287896 3
  • NONHSAG009065 94
  • Lnc-POLD3-1 170
  • Lnc-PPME1-4 170
  • AP001372.2 5

External Ids for LOC100287896 Gene

Previous GeneCards Identifiers for LOC100287896 Gene

  • GC00U929430
  • GC11P074205

Summaries for LOC100287896 Gene

GeneCards Summary for LOC100287896 Gene

LOC100287896 (Uncharacterized LOC100287896) is a Protein Coding gene. Diseases associated with LOC100287896 include Encephalopathy, Neonatal Severe, With Lactic Acidosis And Brain Abnormalities.

Additional gene information for LOC100287896 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100287896 Gene

Genomics for LOC100287896 Gene

GeneHancer (GH) Regulatory Elements for LOC100287896 Gene

Promoters and enhancers for LOC100287896 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100287896 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100287896 gene promoter:
  • AML1a
  • Arnt
  • FOXL1
  • HSF1 (long)
  • HSF1short
  • NF-kappaB
  • NF-kappaB1
  • RelA
  • USF-1
  • USF1

Genomic Locations for LOC100287896 Gene

Genomic Locations for LOC100287896 Gene
chr11:74,493,366-74,498,533
(GRCh38/hg38)
Size:
5,168 bases
Orientation:
Plus strand
chr11:74,204,411-74,209,578
(GRCh37/hg19)
Size:
5,168 bases
Orientation:
Plus strand

Genomic View for LOC100287896 Gene

Genes around LOC100287896 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100287896 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100287896 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100287896 Gene

Proteins for LOC100287896 Gene

Post-translational modifications for LOC100287896 Gene

No Post-translational modifications

Other Protein References for LOC100287896 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100287896 Gene

Domains & Families for LOC100287896 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100287896 Gene

Function for LOC100287896 Gene

Phenotypes From GWAS Catalog for LOC100287896 Gene

Phenotypes for LOC100287896 Gene

GenomeRNAi human phenotypes for LOC100287896:
genes like me logo Genes that share phenotypes with LOC100287896: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100287896 Gene

Localization for LOC100287896 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100287896 Gene

Pathways & Interactions for LOC100287896 Gene

PathCards logo

SuperPathways for LOC100287896 Gene

No Data Available

Interacting Proteins for LOC100287896 Gene

Gene Ontology (GO) - Biological Process for LOC100287896 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100287896 Gene

Drugs & Compounds for LOC100287896 Gene

No Compound Related Data Available

Transcripts for LOC100287896 Gene

mRNA/cDNA for LOC100287896 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) LNCipedia transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100287896 Gene

No ASD Table

Relevant External Links for LOC100287896 Gene

GeneLoc Exon Structure for
LOC100287896

Expression for LOC100287896 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100287896 Gene

SOURCE GeneReport for Unigene cluster for LOC100287896 Gene:

Hs.720935
genes like me logo Genes that share expression patterns with LOC100287896: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100287896 Gene

Orthologs for LOC100287896 Gene

Evolution for LOC100287896 Gene

ENSEMBL:
Gene Tree for LOC100287896 (if available)
TreeFam:
Gene Tree for LOC100287896 (if available)

No data available for Orthologs for LOC100287896 Gene

Paralogs for LOC100287896 Gene

No data available for Paralogs for LOC100287896 Gene

Variants for LOC100287896 Gene

Sequence variations from dbSNP and Humsavar for LOC100287896 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1190703859 likely-pathogenic, ENCEPHALOPATHY, NEONATAL SEVERE, WITH LACTIC ACIDOSIS AND BRAIN ABNORMALITIES 74,493,390(+) A/C 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs539962457 likely-pathogenic, ENCEPHALOPATHY, NEONATAL SEVERE, WITH LACTIC ACIDOSIS AND BRAIN ABNORMALITIES 74,493,615(+) A/G 5_prime_UTR_variant, genic_upstream_transcript_variant, upstream_transcript_variant
rs753904927 likely-pathogenic, ENCEPHALOPATHY, NEONATAL SEVERE, WITH LACTIC ACIDOSIS AND BRAIN ABNORMALITIES 74,493,327(+) A/C upstream_transcript_variant
rs1000663254 -- 74,492,703(+) T/A/C upstream_transcript_variant
rs1000680440 -- 74,497,449(+) T/A coding_sequence_variant, missense_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100287896 Gene

Disorders for LOC100287896 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC100287896 Gene - From: GeneCards

- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LOC100287896: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100287896 Gene

Publications for LOC100287896 Gene

  1. Expressed sequence tag analysis of human RPE/choroid for the NEIBank Project: over 6000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107410) Wistow G … Peterson K (Molecular vision 2002) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 56

No data available for External Links for LOC100287896 Gene

Products for LOC100287896 Gene

Sources for LOC100287896 Gene